(12 nodes) Preribosome, small subunit precursor network (Cicer arietinum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101515273	Nucleolar complex protein 4 homolog isoform X1. (601 aa)
	LOC101496276	Nucleolar complex protein 4 homolog isoform X1. (614 aa)
	LOC101495083	Pumilio homolog 23. (744 aa)
	LOC101513034	rRNA-processing protein EFG1 isoform X1. (357 aa)
	LOC101505995	Nucleolar protein 14. (946 aa)
	LOC101488430	pre-rRNA-processing protein TSR1 homolog. (792 aa)
	LOC101493654	Serine/threonine-protein kinase rio2. (456 aa)
	LOC101511062	Ribosomal RNA processing protein 1 homolog. (550 aa)
	LOC101513976	Protein LTV1 homolog isoform X1. (524 aa)
	LOC101508447	Protein LTV1 homolog. (524 aa)
	LOC101515029	RNA-binding protein NOB1. (631 aa)
	LOC101498904	Bystin. (441 aa)

Your Current Organism:

Cicer arietinum

NCBI taxonomy Id: 3827
Other names: C. arietinum, Cicer arietinum L., chickpea, garbanzo

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101488430	LOC101493654	A0A1S2Y999	A0A1S2YD59	pre-rRNA-processing protein TSR1 homolog.	Serine/threonine-protein kinase rio2.	0.996
LOC101488430	LOC101495083	A0A1S2Y999	A0A1S2XQ04	pre-rRNA-processing protein TSR1 homolog.	Pumilio homolog 23.	0.872
LOC101488430	LOC101496276	A0A1S2Y999	A0A1S2XKP8	pre-rRNA-processing protein TSR1 homolog.	Nucleolar complex protein 4 homolog isoform X1.	0.723
LOC101488430	LOC101498904	A0A1S2Y999	A0A1S3EI13	pre-rRNA-processing protein TSR1 homolog.	Bystin.	0.999
LOC101488430	LOC101505995	A0A1S2Y999	A0A1S2Y3D1	pre-rRNA-processing protein TSR1 homolog.	Nucleolar protein 14.	0.971
LOC101488430	LOC101508447	A0A1S2Y999	A0A1S2Z7N7	pre-rRNA-processing protein TSR1 homolog.	Protein LTV1 homolog.	0.997
LOC101488430	LOC101511062	A0A1S2Y999	A0A1S2YNW9	pre-rRNA-processing protein TSR1 homolog.	Ribosomal RNA processing protein 1 homolog.	0.816
LOC101488430	LOC101513976	A0A1S2Y999	A0A1S2YTB6	pre-rRNA-processing protein TSR1 homolog.	Protein LTV1 homolog isoform X1.	0.997
LOC101488430	LOC101515029	A0A1S2Y999	A0A1S3E9Z2	pre-rRNA-processing protein TSR1 homolog.	RNA-binding protein NOB1.	0.999
LOC101488430	LOC101515273	A0A1S2Y999	A0A1S2XCV0	pre-rRNA-processing protein TSR1 homolog.	Nucleolar complex protein 4 homolog isoform X1.	0.723
LOC101493654	LOC101488430	A0A1S2YD59	A0A1S2Y999	Serine/threonine-protein kinase rio2.	pre-rRNA-processing protein TSR1 homolog.	0.996
LOC101493654	LOC101496276	A0A1S2YD59	A0A1S2XKP8	Serine/threonine-protein kinase rio2.	Nucleolar complex protein 4 homolog isoform X1.	0.654
LOC101493654	LOC101498904	A0A1S2YD59	A0A1S3EI13	Serine/threonine-protein kinase rio2.	Bystin.	0.995
LOC101493654	LOC101505995	A0A1S2YD59	A0A1S2Y3D1	Serine/threonine-protein kinase rio2.	Nucleolar protein 14.	0.842
LOC101493654	LOC101508447	A0A1S2YD59	A0A1S2Z7N7	Serine/threonine-protein kinase rio2.	Protein LTV1 homolog.	0.996
LOC101493654	LOC101511062	A0A1S2YD59	A0A1S2YNW9	Serine/threonine-protein kinase rio2.	Ribosomal RNA processing protein 1 homolog.	0.570
LOC101493654	LOC101513976	A0A1S2YD59	A0A1S2YTB6	Serine/threonine-protein kinase rio2.	Protein LTV1 homolog isoform X1.	0.996
LOC101493654	LOC101515029	A0A1S2YD59	A0A1S3E9Z2	Serine/threonine-protein kinase rio2.	RNA-binding protein NOB1.	0.997
LOC101493654	LOC101515273	A0A1S2YD59	A0A1S2XCV0	Serine/threonine-protein kinase rio2.	Nucleolar complex protein 4 homolog isoform X1.	0.654
LOC101495083	LOC101488430	A0A1S2XQ04	A0A1S2Y999	Pumilio homolog 23.	pre-rRNA-processing protein TSR1 homolog.	0.872