13 items (Cicer arietinum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101510432	Uncharacterized protein LOC101510432. (462 aa)
	LOC101495276	Uncharacterized protein LOC101495276. (433 aa)
	LOC101495937	26S proteasome non-ATPase regulatory subunit 10. (243 aa)
	LOC101501463	Outer envelope membrane protein 7-like. (59 aa)
	LOC101503073	Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic. (793 aa)
	LOC101510709	Ankyrin repeat domain-containing protein 2A-like. (340 aa)
	LOC101502140	Outer envelope pore protein 37, chloroplastic. (336 aa)
	LOC101496450	Uncharacterized protein LOC101496450 isoform X1. (592 aa)
	LOC101506984	Cold-regulated 413 inner membrane protein 1, chloroplastic isoform X1. (248 aa)
	LOC101515154	Outer envelope pore protein 16-2, chloroplastic. (173 aa)
	LOC101500782	Uncharacterized protein LOC101500782; Belongs to the globin family. (563 aa)
	LOC101492467	Beta-glucosidase-like SFR2, chloroplastic; Belongs to the glycosyl hydrolase 1 family. (634 aa)
	LOC101490648	Outer envelope pore protein 16-2, chloroplastic-like isoform X1. (185 aa)

Your Current Organism:

Cicer arietinum

NCBI taxonomy Id: 3827
Other names: C. arietinum, Cicer arietinum L., chickpea, garbanzo

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101492467	LOC101502140	A0A1S3EEQ2	A0A1S2Y6M9	Beta-glucosidase-like SFR2, chloroplastic; Belongs to the glycosyl hydrolase 1 family.	Outer envelope pore protein 37, chloroplastic.	0.400
LOC101496450	LOC101501463	A0A1S2YDM0	A0A1S2XS12	Uncharacterized protein LOC101496450 isoform X1.	Outer envelope membrane protein 7-like.	0.469
LOC101496450	LOC101510709	A0A1S2YDM0	A0A1S2Y5K1	Uncharacterized protein LOC101496450 isoform X1.	Ankyrin repeat domain-containing protein 2A-like.	0.503
LOC101500782	LOC101503073	A0A1S3ECV3	A0A1S2Y4I7	Uncharacterized protein LOC101500782; Belongs to the globin family.	Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic.	0.954
LOC101501463	LOC101496450	A0A1S2XS12	A0A1S2YDM0	Outer envelope membrane protein 7-like.	Uncharacterized protein LOC101496450 isoform X1.	0.469
LOC101501463	LOC101502140	A0A1S2XS12	A0A1S2Y6M9	Outer envelope membrane protein 7-like.	Outer envelope pore protein 37, chloroplastic.	0.465
LOC101501463	LOC101510709	A0A1S2XS12	A0A1S2Y5K1	Outer envelope membrane protein 7-like.	Ankyrin repeat domain-containing protein 2A-like.	0.505
LOC101502140	LOC101492467	A0A1S2Y6M9	A0A1S3EEQ2	Outer envelope pore protein 37, chloroplastic.	Beta-glucosidase-like SFR2, chloroplastic; Belongs to the glycosyl hydrolase 1 family.	0.400
LOC101502140	LOC101501463	A0A1S2Y6M9	A0A1S2XS12	Outer envelope pore protein 37, chloroplastic.	Outer envelope membrane protein 7-like.	0.465
LOC101503073	LOC101500782	A0A1S2Y4I7	A0A1S3ECV3	Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic.	Uncharacterized protein LOC101500782; Belongs to the globin family.	0.954
LOC101510709	LOC101496450	A0A1S2Y5K1	A0A1S2YDM0	Ankyrin repeat domain-containing protein 2A-like.	Uncharacterized protein LOC101496450 isoform X1.	0.503
LOC101510709	LOC101501463	A0A1S2Y5K1	A0A1S2XS12	Ankyrin repeat domain-containing protein 2A-like.	Outer envelope membrane protein 7-like.	0.505