38 items (Cicer arietinum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101513336	Probable methyltransferase PMT27. (840 aa)
	LOC101489795	Methyltransferase. (608 aa)
	LOC101497349	Uncharacterized protein LOC101497349. (460 aa)
	LOC101488583	Uncharacterized protein LOC101488583. (385 aa)
	LOC101503350	Methyltransferase. (651 aa)
	LOC101511399	Methyltransferase. (593 aa)
	LOC101512467	Methyltransferase. (683 aa)
	LOC101514757	Methyltransferase. (595 aa)
	LOC101497053	Methyltransferase. (598 aa)
	LOC101507279	Methyltransferase. (623 aa)
	LOC101506306	Methyltransferase. (624 aa)
	LOC101489741	Methyltransferase. (636 aa)
	LOC101512531	Methyltransferase. (722 aa)
	LOC101508990	Uncharacterized protein LOC101508990. (423 aa)
	LOC101491769	Methyltransferase. (606 aa)
	LOC101493644	Methyltransferase. (689 aa)
	LOC101506647	Probable methyltransferase PMT24. (782 aa)
	LOC101492102	Probable methyltransferase PMT26. (803 aa)
	LOC101498620	Methyltransferase. (633 aa)
	LOC101488994	Methyltransferase. (666 aa)
	LOC101508776	Methyltransferase. (624 aa)
	LOC101513072	Probable methyltransferase PMT26. (819 aa)
	LOC101490313	Methyltransferase. (619 aa)
	LOC101509665	Methyltransferase. (611 aa)
	LOC101509028	Probable methyltransferase PMT27. (848 aa)
	LOC101506914	Methyltransferase. (644 aa)
	LOC101510977	Methyltransferase. (610 aa)
	LOC101513123	Methyltransferase. (600 aa)
	LOC101508747	Methyltransferase. (600 aa)
	LOC101510691	Methyltransferase. (649 aa)
	LOC101499373	Methyltransferase. (194 aa)
	LOC105851537	Methyltransferase. (194 aa)
	LOC101515083	Methyltransferase. (649 aa)
	LOC105851862	Methyltransferase. (618 aa)
	LOC101498967	Uncharacterized protein LOC101498967. (390 aa)
	LOC101489883	Uncharacterized protein LOC101489883. (505 aa)
	LOC101497899	Methyltransferase. (604 aa)
	LOC101506251	Methyltransferase. (598 aa)

Your Current Organism:

Cicer arietinum

NCBI taxonomy Id: 3827
Other names: C. arietinum, Cicer arietinum L., chickpea, garbanzo

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101488994	LOC101497349	A0A1S2YDD5	A0A1S2XJJ0	Methyltransferase.	Uncharacterized protein LOC101497349.	0.407
LOC101489795	LOC101497349	A0A1S2XIY9	A0A1S2XJJ0	Methyltransferase.	Uncharacterized protein LOC101497349.	0.425
LOC101492102	LOC101497349	A0A1S2YCT3	A0A1S2XJJ0	Probable methyltransferase PMT26.	Uncharacterized protein LOC101497349.	0.459
LOC101497349	LOC101488994	A0A1S2XJJ0	A0A1S2YDD5	Uncharacterized protein LOC101497349.	Methyltransferase.	0.407
LOC101497349	LOC101489795	A0A1S2XJJ0	A0A1S2XIY9	Uncharacterized protein LOC101497349.	Methyltransferase.	0.425
LOC101497349	LOC101492102	A0A1S2XJJ0	A0A1S2YCT3	Uncharacterized protein LOC101497349.	Probable methyltransferase PMT26.	0.459
LOC101497349	LOC101506251	A0A1S2XJJ0	A0A1S3EFR5	Uncharacterized protein LOC101497349.	Methyltransferase.	0.401
LOC101497349	LOC101510977	A0A1S2XJJ0	A0A1S2YWV7	Uncharacterized protein LOC101497349.	Methyltransferase.	0.422
LOC101497349	LOC101513072	A0A1S2XJJ0	A0A1S2YF73	Uncharacterized protein LOC101497349.	Probable methyltransferase PMT26.	0.450
LOC101506251	LOC101497349	A0A1S3EFR5	A0A1S2XJJ0	Methyltransferase.	Uncharacterized protein LOC101497349.	0.401
LOC101510977	LOC101497349	A0A1S2YWV7	A0A1S2XJJ0	Methyltransferase.	Uncharacterized protein LOC101497349.	0.422
LOC101513072	LOC101497349	A0A1S2YF73	A0A1S2XJJ0	Probable methyltransferase PMT26.	Uncharacterized protein LOC101497349.	0.450