13 items (Cicer arietinum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101492547	Exosome complex component RRP42-like. (286 aa)
	LOC101489474	D-aminoacyl-tRNA deacylase. (361 aa)
	LOC101491925	Exosome complex component RRP42-like. (286 aa)
	LOC101497104	Exosome complex component RRP41-like. (257 aa)
	LOC101491819	LOW QUALITY PROTEIN: exosome complex component RRP40-like. (149 aa)
	LOC101515009	Exosome complex component RRP45A-like. (450 aa)
	LOC101499023	Exosome complex exonuclease RRP46 homolog isoform X1. (243 aa)
	LOC101500832	Exosome complex component RRP41 homolog isoform X1. (241 aa)
	LOC101506944	mRNA-decapping enzyme subunit 2. (325 aa)
	LOC101506177	Exosome complex component RRP4 homolog. (327 aa)
	LOC101504261	Transportin-1. (893 aa)
	LOC101501810	Exosome complex component RRP43. (302 aa)
	LOC101504662	Putative exosome complex component rrp40. (237 aa)

Your Current Organism:

Cicer arietinum

NCBI taxonomy Id: 3827
Other names: C. arietinum, Cicer arietinum L., chickpea, garbanzo

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101489474	LOC101491819	A0A1S2YU38	A0A3Q7XVA3	D-aminoacyl-tRNA deacylase.	LOW QUALITY PROTEIN: exosome complex component RRP40-like.	0.765
LOC101489474	LOC101491925	A0A1S2YU38	A0A1S2YSM4	D-aminoacyl-tRNA deacylase.	Exosome complex component RRP42-like.	0.761
LOC101489474	LOC101492547	A0A1S2YU38	A0A1S2Y464	D-aminoacyl-tRNA deacylase.	Exosome complex component RRP42-like.	0.761
LOC101489474	LOC101497104	A0A1S2YU38	A0A1S2YK67	D-aminoacyl-tRNA deacylase.	Exosome complex component RRP41-like.	0.821
LOC101489474	LOC101499023	A0A1S2YU38	A0A1S2XS35	D-aminoacyl-tRNA deacylase.	Exosome complex exonuclease RRP46 homolog isoform X1.	0.873
LOC101489474	LOC101500832	A0A1S2YU38	A0A1S2XUT9	D-aminoacyl-tRNA deacylase.	Exosome complex component RRP41 homolog isoform X1.	0.821
LOC101489474	LOC101501810	A0A1S2YU38	A0A1S2Y2R8	D-aminoacyl-tRNA deacylase.	Exosome complex component RRP43.	0.787
LOC101489474	LOC101504261	A0A1S2YU38	A0A1S2Y1Y7	D-aminoacyl-tRNA deacylase.	Transportin-1.	0.723
LOC101489474	LOC101504662	A0A1S2YU38	A0A1S3DZV4	D-aminoacyl-tRNA deacylase.	Putative exosome complex component rrp40.	0.765
LOC101489474	LOC101506177	A0A1S2YU38	A0A1S2XVD5	D-aminoacyl-tRNA deacylase.	Exosome complex component RRP4 homolog.	0.754
LOC101489474	LOC101506944	A0A1S2YU38	A0A1S3EHY2	D-aminoacyl-tRNA deacylase.	mRNA-decapping enzyme subunit 2.	0.987
LOC101489474	LOC101515009	A0A1S2YU38	A0A1S3E3E4	D-aminoacyl-tRNA deacylase.	Exosome complex component RRP45A-like.	0.823
LOC101491819	LOC101489474	A0A3Q7XVA3	A0A1S2YU38	LOW QUALITY PROTEIN: exosome complex component RRP40-like.	D-aminoacyl-tRNA deacylase.	0.765
LOC101491819	LOC101491925	A0A3Q7XVA3	A0A1S2YSM4	LOW QUALITY PROTEIN: exosome complex component RRP40-like.	Exosome complex component RRP42-like.	0.972
LOC101491819	LOC101492547	A0A3Q7XVA3	A0A1S2Y464	LOW QUALITY PROTEIN: exosome complex component RRP40-like.	Exosome complex component RRP42-like.	0.972
LOC101491819	LOC101497104	A0A3Q7XVA3	A0A1S2YK67	LOW QUALITY PROTEIN: exosome complex component RRP40-like.	Exosome complex component RRP41-like.	0.975
LOC101491819	LOC101499023	A0A3Q7XVA3	A0A1S2XS35	LOW QUALITY PROTEIN: exosome complex component RRP40-like.	Exosome complex exonuclease RRP46 homolog isoform X1.	0.988
LOC101491819	LOC101500832	A0A3Q7XVA3	A0A1S2XUT9	LOW QUALITY PROTEIN: exosome complex component RRP40-like.	Exosome complex component RRP41 homolog isoform X1.	0.975
LOC101491819	LOC101501810	A0A3Q7XVA3	A0A1S2Y2R8	LOW QUALITY PROTEIN: exosome complex component RRP40-like.	Exosome complex component RRP43.	0.987
LOC101491819	LOC101504261	A0A3Q7XVA3	A0A1S2Y1Y7	LOW QUALITY PROTEIN: exosome complex component RRP40-like.	Transportin-1.	0.678