12 items (Cicer arietinum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101493955	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic isoform X1. (303 aa)
	LOC101496653	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic. (396 aa)
	NAC38	Protein CUP-SHAPED COTYLEDON 3. (343 aa)
	LOC101489866	4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic. (448 aa)
	LOC101495161	acetyl-CoA acetyltransferase, cytosolic 1; Belongs to the thiolase-like superfamily. Thiolase family. (408 aa)
	LOC101499627	3-hydroxy-3-methylglutaryl coenzyme A reductase. (570 aa)
	LOC101491414	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. (228 aa)
	LOC101506157	3-hydroxy-3-methylglutaryl coenzyme A reductase. (569 aa)
	LOC101515596	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (Ferredoxin), chloroplastic. (751 aa)
	LOC101507469	3-hydroxy-3-methylglutaryl coenzyme A reductase. (575 aa)
	LOC101489491	acetyl-CoA acetyltransferase, cytosolic 1; Belongs to the thiolase-like superfamily. Thiolase family. (406 aa)
	LOC101491864	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family. (421 aa)

Your Current Organism:

Cicer arietinum

NCBI taxonomy Id: 3827
Other names: C. arietinum, Cicer arietinum L., chickpea, garbanzo

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101489491	LOC101489866	A0A1S2XMI2	A0A1S2YN96	acetyl-CoA acetyltransferase, cytosolic 1; Belongs to the thiolase-like superfamily. Thiolase family.	4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic.	0.405
LOC101489491	LOC101491414	A0A1S2XMI2	A0A1S2YXL7	acetyl-CoA acetyltransferase, cytosolic 1; Belongs to the thiolase-like superfamily. Thiolase family.	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.	0.569
LOC101489491	LOC101491864	A0A1S2XMI2	A0A1S2Y1U4	acetyl-CoA acetyltransferase, cytosolic 1; Belongs to the thiolase-like superfamily. Thiolase family.	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family.	0.893
LOC101489491	LOC101493955	A0A1S2XMI2	A0A1S2Y4V7	acetyl-CoA acetyltransferase, cytosolic 1; Belongs to the thiolase-like superfamily. Thiolase family.	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic isoform X1.	0.658
LOC101489491	LOC101495161	A0A1S2XMI2	A0A1S2YNU0	acetyl-CoA acetyltransferase, cytosolic 1; Belongs to the thiolase-like superfamily. Thiolase family.	acetyl-CoA acetyltransferase, cytosolic 1; Belongs to the thiolase-like superfamily. Thiolase family.	0.901
LOC101489491	LOC101496653	A0A1S2XMI2	A0A1S2Y6R9	acetyl-CoA acetyltransferase, cytosolic 1; Belongs to the thiolase-like superfamily. Thiolase family.	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic.	0.619
LOC101489491	LOC101499627	A0A1S2XMI2	A0A1S2YT35	acetyl-CoA acetyltransferase, cytosolic 1; Belongs to the thiolase-like superfamily. Thiolase family.	3-hydroxy-3-methylglutaryl coenzyme A reductase.	0.452
LOC101489491	LOC101506157	A0A1S2XMI2	A0A1S2YZB1	acetyl-CoA acetyltransferase, cytosolic 1; Belongs to the thiolase-like superfamily. Thiolase family.	3-hydroxy-3-methylglutaryl coenzyme A reductase.	0.452
LOC101489491	LOC101507469	A0A1S2XMI2	A0A1S2XMY1	acetyl-CoA acetyltransferase, cytosolic 1; Belongs to the thiolase-like superfamily. Thiolase family.	3-hydroxy-3-methylglutaryl coenzyme A reductase.	0.452
LOC101489866	LOC101489491	A0A1S2YN96	A0A1S2XMI2	4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic.	acetyl-CoA acetyltransferase, cytosolic 1; Belongs to the thiolase-like superfamily. Thiolase family.	0.405
LOC101489866	LOC101491414	A0A1S2YN96	A0A1S2YXL7	4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic.	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.	0.746
LOC101489866	LOC101491864	A0A1S2YN96	A0A1S2Y1U4	4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic.	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family.	0.948
LOC101489866	LOC101493955	A0A1S2YN96	A0A1S2Y4V7	4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic.	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic isoform X1.	0.617
LOC101489866	LOC101495161	A0A1S2YN96	A0A1S2YNU0	4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic.	acetyl-CoA acetyltransferase, cytosolic 1; Belongs to the thiolase-like superfamily. Thiolase family.	0.515
LOC101489866	LOC101496653	A0A1S2YN96	A0A1S2Y6R9	4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic.	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic.	0.721
LOC101489866	LOC101515596	A0A1S2YN96	A0A3Q7XSY7	4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic.	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (Ferredoxin), chloroplastic.	0.988
LOC101491414	LOC101489491	A0A1S2YXL7	A0A1S2XMI2	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.	acetyl-CoA acetyltransferase, cytosolic 1; Belongs to the thiolase-like superfamily. Thiolase family.	0.569
LOC101491414	LOC101489866	A0A1S2YXL7	A0A1S2YN96	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.	4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic.	0.746
LOC101491414	LOC101491864	A0A1S2YXL7	A0A1S2Y1U4	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family.	0.660
LOC101491414	LOC101493955	A0A1S2YXL7	A0A1S2Y4V7	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic isoform X1.	0.881