STRINGSTRING
SPRI_3453 SPRI_3453 SPRI_3454 SPRI_3454 SPRI_3455 SPRI_3455 SPRI_4430 SPRI_4430 SPRI_4431 SPRI_4431 SPRI_4459 SPRI_4459 SPRI_4460 SPRI_4460
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SPRI_3453Aromatic acid decarboxylase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (380 aa)
SPRI_3454ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (241 aa)
SPRI_3455ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (716 aa)
SPRI_4430Peptide ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (262 aa)
SPRI_4431Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (856 aa)
SPRI_4459ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (845 aa)
SPRI_4460Peptide ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (256 aa)
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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