(48 nodes) Quorum sensing network (Streptomyces pristinaespiralis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	SPRI_0477	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (220 aa)
	SPRI_0478	ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (336 aa)
	SPRI_0479	ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (288 aa)
	SPRI_0480	ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (330 aa)
	SPRI_0481	Putative ABC transporter substrate-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (531 aa)
	SPRI_0674	Peptide ABC transporter substrate-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (531 aa)
	SPRI_0675	Peptide ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (317 aa)
	SPRI_0676	ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (261 aa)
	SPRI_0677	Peptide ABC transporter ATPase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (513 aa)
	SPRI_1012	ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (285 aa)
	SPRI_1013	ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (349 aa)
	SPRI_1014	ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (283 aa)
	SPRI_1015	ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (317 aa)
	SPRI_1016	ABC transporter substrate-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (546 aa)
	SPRI_2177	ABC transporter substrate-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (631 aa)
	SPRI_2178	ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (349 aa)
	SPRI_2179	ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (320 aa)
	SPRI_2180	Peptide ABC transporter ATPase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (323 aa)
	SPRI_2181	ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (328 aa)
	SPRI_2392	TesB-like acyl-CoA thioesterase 3; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (283 aa)
	SPRI_2393	Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (218 aa)
	SPRI_2394	Peptide ABC transporter ATPase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (473 aa)
	SPRI_2395	Peptide ABC transporter ATPase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (332 aa)
	SPRI_2396	ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (317 aa)
	SPRI_2397	Peptide ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (334 aa)
	SPRI_2398	Peptide ABC transporter substrate-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (556 aa)
	SPRI_2756	Peptide ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (354 aa)
	SPRI_2757	Methionine ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (342 aa)
	SPRI_2758	Peptide ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (332 aa)
	SPRI_2759	ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (307 aa)
	SPRI_2760	Peptide ABC transporter substrate-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (542 aa)
	SPRI_2763	Peptide ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (382 aa)
	SPRI_2764	Methionine ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (352 aa)
	SPRI_2765	Peptide ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (323 aa)
	SPRI_2766	ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (309 aa)
	SPRI_2767	Peptide ABC transporter substrate-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (538 aa)
	SPRI_3495	Periplasmic dipeptide-binding lipoprotein DppA; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (514 aa)
	SPRI_5901	Peptide-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (532 aa)
	SPRI_6223	Solute-binding transport lipoprotein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (524 aa)
	SPRI_6326	Peptide ABC transporter substrate-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (532 aa)
	SPRI_6327	ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (316 aa)
	SPRI_6328	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (670 aa)
	SPRI_6329	Peptide ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (338 aa)
	SPRI_6330	Glucose dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the DapA family. (315 aa)
	SPRI_6839	ABC transporter substrate-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (499 aa)
	SPRI_6840	ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (612 aa)
	SPRI_6841	Peptide ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (344 aa)
	SPRI_6842	Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (267 aa)

Your Current Organism:

Streptomyces pristinaespiralis

NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis

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node1	node2	node1 annotation	node2 annotation	score
SPRI_0477	SPRI_0478	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.993
SPRI_0477	SPRI_0479	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.973
SPRI_0477	SPRI_0480	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.944
SPRI_0477	SPRI_0481	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Putative ABC transporter substrate-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.966
SPRI_0477	SPRI_0675	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.546
SPRI_0477	SPRI_0676	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.546
SPRI_0477	SPRI_1013	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.461
SPRI_0477	SPRI_1014	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.631
SPRI_0477	SPRI_1015	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.520
SPRI_0477	SPRI_2178	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.543
SPRI_0477	SPRI_2179	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.657
SPRI_0477	SPRI_2180	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATPase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.439
SPRI_0477	SPRI_2181	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.463
SPRI_0477	SPRI_2394	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATPase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.432
SPRI_0477	SPRI_2395	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATPase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.942
SPRI_0477	SPRI_2396	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.572
SPRI_0477	SPRI_2397	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.494
SPRI_0477	SPRI_2757	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Methionine ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.449
SPRI_0477	SPRI_2758	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.561
SPRI_0477	SPRI_2759	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.503