STRINGSTRING
SPRI_1955 SPRI_1955 SPRI_1956 SPRI_1956 pxpA pxpA SPRI_1958 SPRI_1958 SPRI_6150 SPRI_6150 SPRI_6151 SPRI_6151 SPRI_6152 SPRI_6152 SPRI_6153 SPRI_6153
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SPRI_1955Allophanate hydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (290 aa)
SPRI_1956Allophanate hydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (226 aa)
pxpALactam utilization protein LamB; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. (254 aa)
SPRI_1958GntR family transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (231 aa)
SPRI_6150Transmembrane efflux protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (425 aa)
SPRI_6151Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (514 aa)
SPRI_6152Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (307 aa)
SPRI_6153Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (1598 aa)
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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