STRINGSTRING
SPRI_1338 SPRI_1338 SPRI_1339 SPRI_1339 SPRI_1340 SPRI_1340 SPRI_1341 SPRI_1341 SPRI_1342 SPRI_1342 SPRI_5518 SPRI_5518 SPRI_5519 SPRI_5519 SPRI_5520 SPRI_5520 SPRI_5521 SPRI_5521 SPRI_5522 SPRI_5522 SPRI_5771 SPRI_5771
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SPRI_1338ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (419 aa)
SPRI_1339Branched-chain amino acid ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (420 aa)
SPRI_1340Branched-chain amino acid ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (296 aa)
SPRI_1341Branched-chain amino acid ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (264 aa)
SPRI_1342Branched-chain amino acid ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (266 aa)
SPRI_5518ABC transporter substrate-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (386 aa)
SPRI_5519Branched-chain amino acid ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (307 aa)
SPRI_5520Branched-chain amino acid ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (461 aa)
SPRI_5521Branched-chain amino acid ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (382 aa)
SPRI_5522Amino acid ABC transporter ATPase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (255 aa)
SPRI_5771ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (231 aa)
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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