8 items (Streptomyces pristinaespiralis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SPRI_2768	GTP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (635 aa)
	SPRI_0118	ATP-dependent RNA helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (467 aa)
	SPRI_5493	DEAD/DEAH box helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (542 aa)
	SPRI_2710	ATP-dependent RNA helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. (784 aa)
	SPRI_1968	DEAD/DEAH box helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (502 aa)
	rplT	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (127 aa)
	SPRI_7235	ATP-dependent RNA helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (467 aa)
	SPRI_3953	RNA helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (707 aa)

Your Current Organism:

Streptomyces pristinaespiralis

NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPRI_0118	SPRI_2768	SPRI_0118	SPRI_2768	ATP-dependent RNA helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	GTP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.576
SPRI_0118	rplT	SPRI_0118	SPRI_5953	ATP-dependent RNA helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.406
SPRI_1968	SPRI_2768	SPRI_1968	SPRI_2768	DEAD/DEAH box helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	GTP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.564
SPRI_1968	rplT	SPRI_1968	SPRI_5953	DEAD/DEAH box helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.406
SPRI_2710	SPRI_2768	SPRI_2710	SPRI_2768	ATP-dependent RNA helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.	GTP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.575
SPRI_2710	rplT	SPRI_2710	SPRI_5953	ATP-dependent RNA helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.406
SPRI_2768	SPRI_0118	SPRI_2768	SPRI_0118	GTP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	ATP-dependent RNA helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.576
SPRI_2768	SPRI_1968	SPRI_2768	SPRI_1968	GTP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	DEAD/DEAH box helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.564
SPRI_2768	SPRI_2710	SPRI_2768	SPRI_2710	GTP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	ATP-dependent RNA helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.	0.575
SPRI_2768	SPRI_3953	SPRI_2768	SPRI_3953	GTP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	RNA helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.604
SPRI_2768	SPRI_5493	SPRI_2768	SPRI_5493	GTP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	DEAD/DEAH box helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.559
SPRI_2768	SPRI_7235	SPRI_2768	SPRI_7235	GTP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	ATP-dependent RNA helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.576
SPRI_3953	SPRI_2768	SPRI_3953	SPRI_2768	RNA helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	GTP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.604
SPRI_3953	rplT	SPRI_3953	SPRI_5953	RNA helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.406
SPRI_5493	SPRI_2768	SPRI_5493	SPRI_2768	DEAD/DEAH box helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	GTP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.559
SPRI_5493	rplT	SPRI_5493	SPRI_5953	DEAD/DEAH box helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.406
SPRI_7235	SPRI_2768	SPRI_7235	SPRI_2768	ATP-dependent RNA helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	GTP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.576
SPRI_7235	rplT	SPRI_7235	SPRI_5953	ATP-dependent RNA helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.406
rplT	SPRI_0118	SPRI_5953	SPRI_0118	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	ATP-dependent RNA helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.406
rplT	SPRI_1968	SPRI_5953	SPRI_1968	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	DEAD/DEAH box helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.406