STRINGSTRING
SPRI_2599 SPRI_2599 SPRI_3702 SPRI_3702 SPRI_3719 SPRI_3719 SPRI_5318 SPRI_5318 SPRI_6365 SPRI_6365 SPRI_0186 SPRI_0186 SPRI_0193 SPRI_0193 SPRI_0194 SPRI_0194 snaE4 snaE4 SPRI_0300 SPRI_0300 SPRI_0936 SPRI_0936
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SPRI_2599Alpha-ketoglutarate decarboxylase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (1272 aa)
SPRI_3702Branched-chain alpha-keto acid dehydrogenase subunit E2; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (476 aa)
SPRI_3719Branched-chain alpha-keto acid dehydrogenase subunit E2; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (486 aa)
SPRI_5318Dihydrolipoamide acetyltransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (601 aa)
SPRI_6365Condensation protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (437 aa)
SPRI_0186PII peptide synthetase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (2561 aa)
SPRI_0193PI synthetase 3 and 4; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (4848 aa)
SPRI_0194Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (2591 aa)
snaE4Hybrid NRPS/PKS (PKSIV); Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (2686 aa)
SPRI_0300Hybrid PKS/NRPS (PKSI); Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (5166 aa)
SPRI_0936Peptide synthetase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (5237 aa)
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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