36 items (Corynebacterium minutissimum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	fbpA	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)
	pks13	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1607 aa)
	KHO30676.1	Carbohydrate esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	cmtB	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (348 aa)
	lipA_2	Triacylglycerol lipase; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
	lip	Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
	KHO30510.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
	KHO30199.1	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
	KHO30228.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
	cmtA	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (359 aa)
	KHO29843.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
	KHO29915.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	metX	Homoserine acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine. (380 aa)
	lipT	Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the type-B carboxylesterase/lipase family. (569 aa)
	lipY	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (440 aa)
	slpE_2	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (541 aa)
	slpE_1	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (531 aa)
	ydeN	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)
	KHO29565.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
	estB	Feruloyl esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)
	KHO29228.1	Lysophospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	KHO29204.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
	KHO28766.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)
	KHO28817.1	Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the type-B carboxylesterase/lipase family. (428 aa)
	fbpB	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (359 aa)
	KHO28848.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
	KHO28849.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)
	lip2	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
	ptrB	Protease 2; PtrB; oligopeptidase that cleaves peptide bonds following arginine and lysine residues; Derived by automated computational analysis using gene prediction method: Protein Homology. (702 aa)
	KHO28697.1	LpqC; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
	KHO28716.1	Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)
	pip	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (416 aa)
	KHO28620.1	Triacylglycerol lipase; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
	ppsE	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1314 aa)
	cmtC	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (666 aa)
	KHO30746.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)

Your Current Organism:

Corynebacterium minutissimum

NCBI taxonomy Id: 38301
Other names: ATCC 23348, C. minutissimum, CCUG 541, CIP 100652, DSM 20651, IFO 15361, JCM 9387, NBRC 15361, NCTC 10288

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KHO28620.1	KHO28716.1	NX84_11615	NX84_11225	Triacylglycerol lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.450
KHO28620.1	lipY	NX84_11615	NX84_06095	Triacylglycerol lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.435
KHO28716.1	KHO28620.1	NX84_11225	NX84_11615	Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Triacylglycerol lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.450
KHO28716.1	lip	NX84_11225	NX84_01550	Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.751
KHO28716.1	lipA_2	NX84_11225	NX84_01505	Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Triacylglycerol lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
KHO28716.1	lipT	NX84_11225	NX84_06005	Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the type-B carboxylesterase/lipase family.	0.830
KHO28716.1	ppsE	NX84_11225	NX84_11890	Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.435
KHO28848.1	KHO28849.1	NX84_10425	NX84_10430	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
KHO28849.1	KHO28848.1	NX84_10430	NX84_10425	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
KHO29204.1	KHO30199.1	NX84_09705	NX84_02255	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
KHO29204.1	pks13	NX84_09705	NX84_00355	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.693
KHO29228.1	pks13	NX84_08705	NX84_00355	Lysophospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.809
KHO30199.1	KHO29204.1	NX84_02255	NX84_09705	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
KHO30199.1	pks13	NX84_02255	NX84_00355	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.728
KHO30510.1	KHO30746.1	NX84_01695	NX84_00080	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.594
KHO30510.1	pks13	NX84_01695	NX84_00355	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.858
KHO30676.1	cmtA	NX84_00365	NX84_02515	Carbohydrate esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.747
KHO30676.1	cmtB	NX84_00365	NX84_00380	Carbohydrate esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.889
KHO30676.1	cmtC	NX84_00365	NX84_00375	Carbohydrate esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937
KHO30676.1	fbpA	NX84_00365	NX84_04320	Carbohydrate esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762