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rpsH rpsH raiA-2 raiA-2 rpsT rpsT raiA raiA rpsG rpsG rpsC rpsC rpsQ rpsQ rpsP rpsP rpsD rpsD BFS86_05115 BFS86_05115 rpsO rpsO rpsE rpsE rpsN rpsN
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpsHUnannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (131 aa)
raiA-2Unannotated protein. (117 aa)
rpsTUnannotated protein; Binds directly to 16S ribosomal RNA. (88 aa)
raiAUnannotated protein. (118 aa)
rpsGUnannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa)
rpsCUnannotated protein; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (229 aa)
rpsQUnannotated protein; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (82 aa)
rpsPUnannotated protein; Belongs to the bacterial ribosomal protein bS16 family. (83 aa)
rpsDUnannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (206 aa)
BFS86_05115Unannotated protein; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. (564 aa)
rpsOUnannotated protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa)
rpsEUnannotated protein; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (167 aa)
rpsNUnannotated protein; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (101 aa)
Your Current Organism:
Shewanella algae
NCBI taxonomy Id: 38313
Other names: ATCC 51192, CCUG 39064, CCUG 58400 [[Shewanella upenei]], CIP 106454, DSM 9167, IAM 14159, JCM 14758 [[Shewanella haliotis]], JCM 21037, KCTC 12896 [[Shewanella haliotis]], KCTC 22806 [[Shewanella upenei]], NBRC 103173, S. algae, Shewanella alga, Shewanella haliotis, Shewanella haliotis Kim et al. 2007, Shewanella sp. 20-23R, Shewanella sp. CNZ-1, Shewanella upenei, Shewanella upenei Kim et al. 2012, strain 20-23R [[Shewanella upenei]], strain DW01 [[Shewanella haliotis]], strain OK-1
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