STRINGSTRING
Rcas_0172 Rcas_0172 Rcas_0443 Rcas_0443 Rcas_0620 Rcas_0620 Rcas_0999 Rcas_0999 Rcas_1048 Rcas_1048 Rcas_2747 Rcas_2747 Rcas_2748 Rcas_2748 Rcas_2803 Rcas_2803 Rcas_3351 Rcas_3351 Rcas_3352 Rcas_3352 Rcas_3353 Rcas_3353 Rcas_4054 Rcas_4054 Rcas_4055 Rcas_4055 Rcas_4421 Rcas_4421
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Rcas_0172PFAM: small multidrug resistance protein; KEGG: rrs:RoseRS_4585 small multidrug resistance protein. (111 aa)
Rcas_0443KEGG: rrs:RoseRS_4213 membrane protein TerC possibly involved in tellurium resistance-like protein. (281 aa)
Rcas_0620PFAM: protein of unknown function DUF6 transmembrane; KEGG: rrs:RoseRS_3507 protein of unknown function DUF6, transmembrane. (293 aa)
Rcas_0999KEGG: rrs:RoseRS_3820 hypothetical protein. (746 aa)
Rcas_1048Hypothetical protein; KEGG: mgi:Mflv_5589 aminoglycoside nucleotidyltransferase. (146 aa)
Rcas_2747TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rrs:RoseRS_2504 drug resistance transporter, EmrB/QacA subfamily. (500 aa)
Rcas_2748PFAM: major facilitator superfamily MFS_1; KEGG: rrs:RoseRS_2506 major facilitator superfamily MFS_1. (431 aa)
Rcas_2803PFAM: regulatory protein ArsR; KEGG: ava:Ava_3702 transcriptional regulator, ArsR family. (216 aa)
Rcas_3351KEGG: rrs:RoseRS_4063 hypothetical protein. (670 aa)
Rcas_3352KEGG: rrs:RoseRS_4062 hypothetical protein. (123 aa)
Rcas_3353KEGG: rrs:RoseRS_4061 hypothetical protein. (120 aa)
Rcas_4054PFAM: major facilitator superfamily MFS_1; KEGG: rrs:RoseRS_2242 major facilitator superfamily MFS_1. (437 aa)
Rcas_4055TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: rrs:RoseRS_2243 MATE efflux family protein. (483 aa)
Rcas_4421PFAM: major facilitator superfamily MFS_1; KEGG: rrs:RoseRS_3435 major facilitator superfamily MFS_1. (434 aa)
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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