STRINGSTRING
Rcas_0113 Rcas_0113 Rcas_0114 Rcas_0114 Rcas_0115 Rcas_0115 Rcas_0274 Rcas_0274 Rcas_0477 Rcas_0477 Rcas_0478 Rcas_0478 Rcas_0479 Rcas_0479 Rcas_0480 Rcas_0480 Rcas_0481 Rcas_0481 Rcas_0482 Rcas_0482 Rcas_0514 Rcas_0514 Rcas_0515 Rcas_0515 Rcas_0516 Rcas_0516 Rcas_1172 Rcas_1172 Rcas_1173 Rcas_1173 Rcas_1174 Rcas_1174 Rcas_1278 Rcas_1278 Rcas_1879 Rcas_1879 Rcas_1880 Rcas_1880 Rcas_1881 Rcas_1881 Rcas_2544 Rcas_2544 Rcas_2545 Rcas_2545 Rcas_2546 Rcas_2546 Rcas_3152 Rcas_3152 Rcas_3564 Rcas_3564 Rcas_3565 Rcas_3565 Rcas_3566 Rcas_3566 Rcas_3612 Rcas_3612 Rcas_4429 Rcas_4429
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Rcas_0113PFAM: extracellular solute-binding protein family 1; KEGG: rrs:RoseRS_4566 extracellular solute-binding protein, family 1. (455 aa)
Rcas_0114PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_4567 binding-protein-dependent transport systems inner membrane component. (299 aa)
Rcas_0115PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_4568 binding-protein-dependent transport systems inner membrane component. (303 aa)
Rcas_0274PFAM: extracellular solute-binding protein family 1; KEGG: rrs:RoseRS_0263 extracellular solute-binding protein, family 1. (439 aa)
Rcas_0477PFAM: ROK family protein; regulatory protein MarR; regulatory protein Crp; KEGG: rrs:RoseRS_4247 ROK family protein. (405 aa)
Rcas_0478PFAM: extracellular solute-binding protein family 1; KEGG: rrs:RoseRS_4248 extracellular solute-binding protein, family 1. (459 aa)
Rcas_0479PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_4249 binding-protein-dependent transport systems inner membrane component. (314 aa)
Rcas_0480PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_4250 binding-protein-dependent transport systems inner membrane component. (286 aa)
Rcas_0481KEGG: rrs:RoseRS_4251 hypothetical protein. (245 aa)
Rcas_0482KEGG: rrs:RoseRS_4252 hypothetical protein. (230 aa)
Rcas_0514PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_3621 binding-protein-dependent transport systems inner membrane component. (335 aa)
Rcas_0515PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_3620 binding-protein-dependent transport systems inner membrane component. (302 aa)
Rcas_0516PFAM: extracellular solute-binding protein family 1; KEGG: rrs:RoseRS_3619 extracellular solute-binding protein, family 1. (488 aa)
Rcas_1172PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_0801 binding-protein-dependent transport systems inner membrane component. (290 aa)
Rcas_1173PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_0802 binding-protein-dependent transport systems inner membrane component. (330 aa)
Rcas_1174PFAM: extracellular solute-binding protein family 1; KEGG: rrs:RoseRS_0803 extracellular solute-binding protein, family 1. (455 aa)
Rcas_1278PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rrs:RoseRS_0525 ABC transporter related. (367 aa)
Rcas_1879PFAM: extracellular solute-binding protein family 1; KEGG: rrs:RoseRS_2896 extracellular solute-binding protein, family 1. (452 aa)
Rcas_1880PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_2895 binding-protein-dependent transport systems inner membrane component. (316 aa)
Rcas_1881Monosaccharide-transporting ATPase; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_2894 binding-protein-dependent transport systems inner membrane component. (297 aa)
Rcas_2544PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_2820 binding-protein-dependent transport systems inner membrane component. (299 aa)
Rcas_2545PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_2819 binding-protein-dependent transport systems inner membrane component. (316 aa)
Rcas_2546PFAM: extracellular solute-binding protein family 1; KEGG: rrs:RoseRS_2818 extracellular solute-binding protein, family 1. (488 aa)
Rcas_3152PFAM: extracellular solute-binding protein family 1; KEGG: rrs:RoseRS_2315 extracellular solute-binding protein, family 1. (970 aa)
Rcas_3564PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_1357 binding-protein-dependent transport systems inner membrane component. (316 aa)
Rcas_3565PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_1358 binding-protein-dependent transport systems inner membrane component. (291 aa)
Rcas_3566PFAM: extracellular solute-binding protein family 1; KEGG: rrs:RoseRS_1359 extracellular solute-binding protein, family 1. (454 aa)
Rcas_3612PFAM: extracellular solute-binding protein family 1; KEGG: rrs:RoseRS_3940 extracellular solute-binding protein, family 1. (411 aa)
Rcas_4429PFAM: extracellular solute-binding protein family 1; KEGG: rrs:RoseRS_0747 extracellular solute-binding protein, family 1. (430 aa)
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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