STRINGSTRING
Rcas_0542 Rcas_0542 Rcas_0543 Rcas_0543 Rcas_0544 Rcas_0544 Rcas_0545 Rcas_0545 Rcas_0546 Rcas_0546
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Rcas_0542KEGG: rrs:RoseRS_0626 ABC-type branched-chain amino acid transport systems periplasmic component-like protein. (420 aa)
Rcas_0543PFAM: inner-membrane translocator; KEGG: rrs:RoseRS_0625 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (352 aa)
Rcas_0544PFAM: inner-membrane translocator; KEGG: rrs:RoseRS_0624 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (293 aa)
Rcas_0545PFAM: AMP-dependent synthetase and ligase; KEGG: rrs:RoseRS_0623 AMP-dependent synthetase and ligase. (649 aa)
Rcas_0546PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_0622 ABC transporter related. (270 aa)
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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