STRINGSTRING
Rcas_1776 Rcas_1776 Rcas_1777 Rcas_1777 Rcas_1778 Rcas_1778 Rcas_1779 Rcas_1779 Rcas_1968 Rcas_1968 Rcas_3028 Rcas_3028 Rcas_3029 Rcas_3029 Rcas_3030 Rcas_3030 Rcas_3490 Rcas_3490 Rcas_3491 Rcas_3491 Rcas_3492 Rcas_3492 Rcas_3493 Rcas_3493 Rcas_3494 Rcas_3494 Rcas_3495 Rcas_3495 Rcas_3496 Rcas_3496 Rcas_3497 Rcas_3497 Rcas_3502 Rcas_3502 Rcas_3503 Rcas_3503 Rcas_3505 Rcas_3505 Rcas_3506 Rcas_3506 Rcas_3507 Rcas_3507 Rcas_4426 Rcas_4426
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Rcas_1776PFAM: Acetone carboxylase gamma subunit; KEGG: rrs:RoseRS_2093 acetone carboxylase gamma subunit-like protein. (173 aa)
Rcas_1777PFAM: Hydantoinase B/oxoprolinase; KEGG: rrs:RoseRS_2092 hydantoinase B/oxoprolinase. (737 aa)
Rcas_17785-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: rrs:RoseRS_2091 5-oxoprolinase (ATP-hydrolyzing). (715 aa)
Rcas_1779Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rrs:RoseRS_2090 helix-turn-helix-domain containing protein, AraC type. (311 aa)
Rcas_19685-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase B/oxoprolinase; KEGG: rrs:RoseRS_2708 5-oxoprolinase (ATP-hydrolyzing). (528 aa)
Rcas_3028KEGG: rrs:RoseRS_2050 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase. (91 aa)
Rcas_3029KEGG: rrs:RoseRS_2052 hypothetical protein. (255 aa)
Rcas_3030PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: rrs:RoseRS_2053 peptidase S9, prolyl oligopeptidase active site domain protein. (644 aa)
Rcas_3490PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rrs:RoseRS_2153 ErfK/YbiS/YcfS/YnhG family protein. (397 aa)
Rcas_3491N-carbamoylsarcosine amidase; PFAM: isochorismatase hydrolase; KEGG: rrs:RoseRS_0048 isochorismatase hydrolase. (214 aa)
Rcas_34925-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase B/oxoprolinase; KEGG: nar:Saro_0175 5-oxoprolinase (ATP-hydrolyzing). (645 aa)
Rcas_34935-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: nar:Saro_0176 5-oxoprolinase (ATP-hydrolyzing). (681 aa)
Rcas_3494PFAM: pyruvate carboxyltransferase; KEGG: rrs:RoseRS_0049 pyruvate carboxyltransferase. (317 aa)
Rcas_3495Formyl-CoA transferase; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rrs:RoseRS_0050 formyl-CoA transferase; Belongs to the CoA-transferase III family. (402 aa)
Rcas_3496Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rrs:RoseRS_0051 transcriptional regulator, GntR family. (237 aa)
Rcas_3497Hypothetical protein. (148 aa)
Rcas_3502KEGG: nca:Noca_4076 hypothetical protein. (254 aa)
Rcas_3503Conserved hypothetical protein; KEGG: ana:all5013 unknown protein. (146 aa)
Rcas_3505PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ana:all5023 probable hydrolase. (365 aa)
Rcas_3506KEGG: nca:Noca_4101 hypothetical protein. (126 aa)
Rcas_3507KEGG: ava:Ava_2261 hypothetical protein. (226 aa)
Rcas_44265-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: rrs:RoseRS_4325 5-oxoprolinase (ATP-hydrolyzing). (692 aa)
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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