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| | Rcas_2804 | PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: rrs:RoseRS_1675 catalytic domain of components of various dehydrogenase complexes. (445 aa) |
| | rplN | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rpsE | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (180 aa) |
| | rpmD | PFAM: ribosomal protein L30; KEGG: rrs:RoseRS_1167 ribosomal protein L30. (75 aa) |
| | rplO | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (174 aa) |
| | rpsD | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (206 aa) |
| | rpoA | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (323 aa) |
| | rplI | Ribosomal protein L9; Binds to the 23S rRNA. (165 aa) |
| | Rcas_3990 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (444 aa) |
| | Rcas_3989 | TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: rrs:RoseRS_1148 primosome, DnaD subunit. (239 aa) |
| | Rcas_3988 | PFAM: IstB domain protein ATP-binding protein; Chromosomal replication initiator DnaA; SMART: AAA ATPase; KEGG: rrs:RoseRS_1147 IstB domain protein ATP-binding protein. (263 aa) |
| | Rcas_3961 | PFAM: protein of unknown function DUF86; KEGG: syf:Synpcc7942_0032 hypothetical protein. (113 aa) |
| | rpsB | PFAM: ribosomal protein S2; KEGG: rrs:RoseRS_2019 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (263 aa) |
| | Rcas_3916 | KEGG: rrs:RoseRS_3721 hypothetical protein. (128 aa) |
| | Rcas_3902 | KEGG: mfa:Mfla_2613 hypothetical protein. (107 aa) |
| | Rcas_3899 | KEGG: rrs:RoseRS_0597 hypothetical protein. (399 aa) |
| | Rcas_3898 | KEGG: rrs:RoseRS_0596 hypothetical protein. (467 aa) |
| | Rcas_3862 | PFAM: NERD domain protein; KEGG: rrs:RoseRS_1932 hypothetical protein. (466 aa) |
| | Rcas_3845 | PFAM: extracellular solute-binding protein family 5; KEGG: xac:XAC0856 ABC transporter oligopeptide binding protein. (564 aa) |
| | Rcas_3842 | PFAM: extracellular solute-binding protein family 5; KEGG: fnu:FN0396 dipeptide-binding protein. (568 aa) |
| | hypA | Hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. (138 aa) |
| | Rcas_3806 | PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: fra:Francci3_1077 hydrogenase (NiFe) small subunit (HydA). (323 aa) |
| | Rcas_3795 | TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: rrs:RoseRS_0975 hydrogenase expression/formation protein HypE. (352 aa) |
| | Rcas_3780 | PFAM: ribonucleotide reductase; KEGG: rrs:RoseRS_1973 ribonucleotide reductase. (295 aa) |
| | Rcas_3756 | Antenna complex alpha/beta subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (55 aa) |
| | Rcas_3754 | TIGRFAM: photosynthetic reaction center, M subunit; photosynthetic reaction center L subunit; PFAM: photosynthetic reaction centre protein; KEGG: rrs:RoseRS_3268 photosynthetic reaction center, M subunit. (641 aa) |
| | Rcas_3753 | KEGG: rrs:RoseRS_3267 hypothetical protein. (320 aa) |
| | sucD | succinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (290 aa) |
| | pdxT | SNO glutamine amidotransferase; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS. (189 aa) |
| | Rcas_3653 | PFAM: protein of unknown function DUF86; KEGG: rrs:RoseRS_4098 protein of unknown function DUF86. (137 aa) |
| | Rcas_3650 | PFAM: ABC-2 type transporter; KEGG: rrs:RoseRS_4096 ABC-2 type transporter. (283 aa) |
| | Rcas_3611 | PFAM: Amylo-alpha-16-glucosidase; KEGG: rrs:RoseRS_3939 amylo-alpha-1,6-glucosidase. (723 aa) |
| | Rcas_3594 | PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rrs:RoseRS_0954 thiamine pyrophosphate enzyme TPP binding domain protein; Belongs to the TPP enzyme family. (574 aa) |
| | psuG | Indigoidine synthase A family protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family. (305 aa) |
| | Rcas_3578 | PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rrs:RoseRS_1371 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (90 aa) |
| | ppk | Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. (708 aa) |
| | uvrB | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (670 aa) |
| | leuD-3 | 3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 2 subfamily. (170 aa) |
| | leuD-2 | 3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 2 subfamily. (166 aa) |
| | Rcas_3413 | PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: rrs:RoseRS_1562 PBS lyase heat domain protein repeat-containing protein. (369 aa) |
| | Rcas_3412 | Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. (411 aa) |
| | Rcas_3391 | NADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (451 aa) |
| | Rcas_3389 | NADH-quinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (923 aa) |
| | carA | TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase small chain; KEGG: rrs:RoseRS_4055 carbamoyl-phosphate synthase, small subunit; Belongs to the CarA family. (386 aa) |
| | Rcas_3295 | KEGG: rrs:RoseRS_1862 hypothetical protein. (577 aa) |
| | tatC | Sec-independent protein translocase, TatC subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. (311 aa) |
| | Rcas_3257 | PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: rrs:RoseRS_0983 sec-independent translocation protein MttA/Hcf106. (332 aa) |
| | Rcas_3244 | PFAM: glycoside hydrolase family 2 sugar binding; KEGG: rrs:RoseRS_0991 glycoside hydrolase family 2, sugar binding. (916 aa) |
| | Rcas_3201 | PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: rrs:RoseRS_0999 methyl-accepting chemotaxis sensory transducer. (608 aa) |
| | Rcas_3192 | TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: rrs:RoseRS_3075 DNA polymerase III, delta subunit. (354 aa) |
| | Rcas_3170 | KEGG: rrs:RoseRS_2295 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein. (911 aa) |
| | Rcas_3148 | KEGG: rrs:RoseRS_2319 hydrogenase (NiFe) small subunit HydA; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; Nickel-iron dehydrogenase small subunit domain protein. (417 aa) |
| | ruvB | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (347 aa) |
| | Rcas_3016 | PFAM: protein of unknown function DUF86; KEGG: rrs:RoseRS_4529 protein of unknown function DUF86. (131 aa) |
| | uvrC | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (665 aa) |
| | accA-2 | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (276 aa) |
| | accD2 | acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (328 aa) |
| | Rcas_2923 | TIGRFAM: molybdopterin converting factor, subunit 1; MoaD family protein; PFAM: molybdopterin biosynthesis MoaE protein; thiamineS protein; KEGG: rrs:RoseRS_3195 molybdopterin converting factor, subunit 1. (237 aa) |
| | xseB | Exonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (80 aa) |
| | xseA | Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (393 aa) |
| | Rcas_2899 | acetyl-CoA carboxylase, biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (182 aa) |
| | Rcas_2885 | Protein of unknown function UPF0150; PFAM: CopG domain protein DNA-binding domain protein; protein of unknown function UPF0150; KEGG: lpf:plpl0034 hypothetical protein. (137 aa) |
| | Rcas_2884 | PFAM: YcfA family protein; KEGG: bte:BTH_II1999 hypothetical protein. (54 aa) |
| | Rcas_2881 | PFAM: carboxyl transferase; KEGG: rrs:RoseRS_2907 propionyl-CoA carboxylase. (514 aa) |
| | Rcas_2869 | KEGG: cph:Cpha266_1139 hypothetical protein. (104 aa) |
| | Rcas_2860 | PFAM: Amidase; KEGG: rrs:RoseRS_1254 amidase; Belongs to the amidase family. (477 aa) |
| | potA-2 | Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (372 aa) |
| | Rcas_2800 | PFAM: extracellular solute-binding protein family 5; KEGG: rrs:RoseRS_1093 extracellular solute-binding protein, family 5. (630 aa) |
| | Rcas_2740 | PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: rrs:RoseRS_2672 NADH-ubiquinone oxidoreductase, chain 49kDa. (358 aa) |
| | Rcas_2736 | PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: rrs:RoseRS_2668 NADH ubiquinone oxidoreductase, 20 kDa subunit. (125 aa) |
| | Rcas_2728 | KEGG: rrs:RoseRS_4066 hypothetical protein. (157 aa) |
| | priA | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (866 aa) |
| | Rcas_2644 | Beta-mannosidase; PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 sugar binding; KEGG: rrs:RoseRS_1576 beta-mannosidase. (833 aa) |
| | Rcas_2529 | PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: rrs:RoseRS_1816 substrate-binding region of ABC-type glycine betaine transport system. (316 aa) |
| | Rcas_2516 | KEGG: rrs:RoseRS_1828 glycogen debranching enzyme-like protein. (445 aa) |
| | Rcas_2493 | Beta-galactosidase; PFAM: glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: rrs:RoseRS_2714 beta-galactosidase. (1043 aa) |
| | Rcas_2468 | ATP-dependent DNA helicase, RecQ family; KEGG: ana:alr3451 ATP-dependent DNA helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases. (708 aa) |
| | Rcas_2463 | PFAM: protein of unknown function DUF86; KEGG: rrs:RoseRS_3558 protein of unknown function DUF86. (78 aa) |
| | Rcas_2454 | PFAM: extracellular solute-binding protein family 5; KEGG: tpt:Tpet_1687 extracellular solute-binding protein, family 5. (682 aa) |
| | Rcas_2424 | PFAM: extracellular solute-binding protein family 5; KEGG: rrs:RoseRS_2808 extracellular solute-binding protein, family 5. (728 aa) |
| | Rcas_2417 | PFAM: protein of unknown function DUF86; KEGG: syf:Synpcc7942_0275 hypothetical protein. (124 aa) |
| | Rcas_2358 | PFAM: ABC-2 type transporter; KEGG: rrs:RoseRS_2479 ABC-2 type transporter. (376 aa) |
| | Rcas_2356 | PFAM: ABC-2 type transporter; KEGG: rrs:RoseRS_2477 ABC-2 type transporter. (286 aa) |
| | Rcas_2335 | PFAM: NAD/NADP octopine/nopaline dehydrogenase; NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: rrs:RoseRS_2460 NAD/NADP octopine/nopaline dehydrogenase. (368 aa) |
| | dnaX | DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (644 aa) |
| | Rcas_2287 | SMART: PBS lyase HEAT domain protein repeat-containing protein; KEGG: rrs:RoseRS_1528 PBS lyase heat domain protein repeat-containing protein. (988 aa) |
| | gcvH | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. (129 aa) |
| | gcvPA | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. (445 aa) |
| | gcvPB | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. (518 aa) |
| | Rcas_2243 | PFAM: Amidase; KEGG: rrs:RoseRS_3083 amidase; Belongs to the amidase family. (463 aa) |
| | Rcas_2188 | Thiamine pyrophosphate protein central region; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KR domain protein; KEGG: rrs:RoseRS_1073 thiamine pyrophosphate enzyme, central region; Belongs to the TPP enzyme family. (847 aa) |
| | Rcas_2183 | TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_1802 polar amino acid ABC transporter, inner membrane subunit. (217 aa) |
| | Rcas_2181 | TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_1800 polar amino acid ABC transporter, inner membrane subunit. (224 aa) |
| | Rcas_2176 | PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rrs:RoseRS_1796 ABC transporter related; Belongs to the ABC transporter superfamily. (398 aa) |
| | Rcas_2170 | PFAM: Amylo-alpha-16-glucosidase; KEGG: rrs:RoseRS_1790 amylo-alpha-1,6-glucosidase. (676 aa) |
| | Rcas_2147 | PFAM: initiation factor 2B related; KEGG: rrs:RoseRS_3027 initiation factor 2B related; Belongs to the eIF-2B alpha/beta/delta subunits family. (309 aa) |
| | Rcas_2110 | PFAM: extracellular solute-binding protein family 5; KEGG: rrs:RoseRS_3050 extracellular solute-binding protein, family 5. (735 aa) |
| | Rcas_2021 | PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: rrs:RoseRS_1740 glycoside hydrolase family 2, sugar binding. (724 aa) |
| | Rcas_2011 | Dihydrolipoyllysine-residue succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: rrs:RoseRS_1726 dihydrolipoyllysine-residue succinyltransferase. (454 aa) |
| | gatA | glutamyl-tRNA(Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). (490 aa) |
| | Rcas_1946 | Transketolase central region; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (795 aa) |
| | Rcas_1945 | PFAM: protein of unknown function DUF86; KEGG: rrs:RoseRS_2953 protein of unknown function DUF86. (131 aa) |
| | Rcas_1862 | TIGRFAM: MoaD family protein; PFAM: thiamineS protein; KEGG: pas:Pars_0825 MoaD family protein. (92 aa) |
| | Rcas_1847 | TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: rrs:RoseRS_2556 (NiFe) hydrogenase maturation protein HypF. (779 aa) |
| | rpmF | TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: rrs:RoseRS_2613 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (65 aa) |
| | Rcas_1766 | PFAM: ABC-2 type transporter; KEGG: rrs:RoseRS_2479 ABC-2 type transporter. (370 aa) |
| | moaA | Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate. (356 aa) |
| | Rcas_1722 | PFAM: ABC-3 protein; KEGG: rrs:RoseRS_3068 ABC-3 protein. (293 aa) |
| | Rcas_1721 | Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; ABC-3 protein; KEGG: rrs:RoseRS_3067 ABC-3 protein. (370 aa) |
| | Rcas_1691 | TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; KEGG: rrs:RoseRS_1429 helix-hairpin-helix motif. (222 aa) |
| | ffh | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. (444 aa) |
| | rpoB | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1245 aa) |
| | rpoC | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1502 aa) |
| | Rcas_1589 | ABC-3 protein; PFAM: transport system permease protein; ABC-3 protein; KEGG: rrs:RoseRS_1256 ABC-3 protein. (281 aa) |
| | Rcas_1578 | PFAM: extracellular solute-binding protein family 5; KEGG: rrs:RoseRS_0937 extracellular solute-binding protein, family 5. (595 aa) |
| | Rcas_1557 | TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rrs:RoseRS_1968 acetolactate synthase, large subunit, biosynthetic type. (581 aa) |
| | leuD | 3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. (204 aa) |
| | Rcas_1532 | KEGG: rrs:RoseRS_3396 2-oxoglutarate dehydrogenase, E1 subunit; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: dehydrogenase E1 component; Transketolase central region. (953 aa) |
| | Rcas_1531 | 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (399 aa) |
| | Rcas_1509 | PFAM: ABC-2 type transporter; KEGG: rrs:RoseRS_3741 ABC-2 type transporter. (501 aa) |
| | clpX | ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (436 aa) |
| | Rcas_1456 | TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_4003 polar amino acid ABC transporter, inner membrane subunit. (403 aa) |
| | Rcas_1455 | TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_4004 polar amino acid ABC transporter, inner membrane subunit. (396 aa) |
| | rnpA | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. (122 aa) |
| | Rcas_1417 | PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: rrs:RoseRS_3973 PBS lyase heat domain protein repeat-containing protein. (309 aa) |
| | Rcas_1365 | PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: rrs:RoseRS_3542 NADH dehydrogenase (quinone). (532 aa) |
| | Rcas_1364 | PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: rrs:RoseRS_3543 NADH dehydrogenase (ubiquinone), 24 kDa subunit. (173 aa) |
| | Rcas_1320 | TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: rrs:RoseRS_3674 NADH-quinone oxidoreductase, E subunit. (174 aa) |
| | sbcD | Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (418 aa) |
| | atpB | ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family. (331 aa) |
| | atpE | ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. (77 aa) |
| | atpF | ATP synthase F0, B subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. (163 aa) |
| | atpH | H+transporting two-sector ATPase delta (OSCP) subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family. (158 aa) |
| | atpA | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. (526 aa) |
| | atpG | ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. (290 aa) |
| | atpD | ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. (471 aa) |
| | atpC | ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. (139 aa) |
| | Rcas_1245 | PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: rrs:RoseRS_0781 PBS lyase heat domain protein repeat-containing protein. (353 aa) |
| | potA | Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (370 aa) |
| | Rcas_1232 | PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rrs:RoseRS_0795 ABC transporter related; Belongs to the ABC transporter superfamily. (355 aa) |
| | Rcas_1196 | Protein serine phosphatase with GAF(s) sensor(s); PFAM: GAF domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: rrs:RoseRS_2162 protein serine phosphatase with GAF(s) sensor(s). (1004 aa) |
| | Rcas_1168 | Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system. (77 aa) |
| | accD1 | acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (298 aa) |
| | accA | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (287 aa) |
| | ruvA | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (197 aa) |
| | Rcas_1106 | PFAM: protein of unknown function DUF86; KEGG: rrs:RoseRS_0073 protein of unknown function DUF86. (144 aa) |
| | Rcas_1076 | PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: rrs:RoseRS_3807 AAA ATPase, central domain protein. (544 aa) |
| | lexA | SOS-response transcriptional repressor, LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (218 aa) |
| | Rcas_1067 | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). (211 aa) |
| | Rcas_1058 | KEGG: rrs:RoseRS_0413 ABC-type dipeptide transport system periplasmic component-like protein. (653 aa) |
| | Rcas_1008 | PFAM: protein of unknown function UPF0150; KEGG: rrs:RoseRS_1435 protein of unknown function UPF0150. (86 aa) |
| | Rcas_1007 | PFAM: YcfA family protein. (70 aa) |
| | Rcas_0975 | Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: rrs:RoseRS_3827 propionyl-CoA carboxylase. (535 aa) |
| | Rcas_0950 | PFAM: carboxyl transferase; KEGG: rrs:RoseRS_3695 carboxyl transferase. (514 aa) |
| | Rcas_0921 | PFAM: alpha-L-rhamnosidase; KEGG: sus:Acid_3742 alpha-L-rhamnosidase. (775 aa) |
| | Rcas_0912 | PFAM: HpcH/HpaI aldolase; KEGG: rrs:RoseRS_4173 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family. (347 aa) |
| | Rcas_0906 | PFAM: extracellular solute-binding protein family 5; KEGG: tma:TM0071 putative oligopeptide transport system substrate-binding protein. (659 aa) |
| | Rcas_0883 | PFAM: protein of unknown function DUF86; KEGG: gme:Gmet_3258 protein of unknown function DUF86. (97 aa) |
| | tpl | KEGG: rrs:RoseRS_0320 tyrosine phenol-lyase; TIGRFAM: tyrosine phenol-lyase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase. (471 aa) |
| | Rcas_0820 | PFAM: iron permease FTR1; KEGG: rrs:RoseRS_4468 iron permease FTR1. (782 aa) |
| | Rcas_0762 | PFAM: protein of unknown function DUF86; KEGG: rrs:RoseRS_4417 protein of unknown function DUF86. (137 aa) |
| | Rcas_0749 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (377 aa) |
| | Rcas_0643 | KEGG: rrs:RoseRS_0566 multimeric flavodoxin WrbA-like protein. (172 aa) |
| | cobQ | Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. (490 aa) |
| | uvrA | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (976 aa) |
| | Rcas_0442 | KEGG: rrs:RoseRS_4212 hypothetical protein. (762 aa) |
| | dcd | Deoxycytidine triphosphate deaminase; Catalyzes the deamination of dCTP to dUTP. (184 aa) |
| | Rcas_0383 | PFAM: extracellular solute-binding protein family 5; KEGG: rrs:RoseRS_4599 extracellular solute-binding protein, family 5. (618 aa) |
| | Rcas_0382 | PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: rrs:RoseRS_4600 PBS lyase heat domain protein repeat-containing protein. (221 aa) |
| | Rcas_0320 | PFAM: extracellular solute-binding protein family 5; KEGG: rrs:RoseRS_0725 extracellular solute-binding protein, family 5. (556 aa) |
| | Rcas_0317 | PFAM: thiamineS protein; KEGG: rrs:RoseRS_0722 thiamineS protein. (93 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. (652 aa) |
| | Rcas_0197 | PFAM: extracellular solute-binding protein family 5; KEGG: rrs:RoseRS_0093 extracellular solute-binding protein, family 5. (605 aa) |
| | Rcas_0155 | Multi-sensor signal transduction histidine kinase; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; KEGG: rrs:RoseRS_0484 multi-sensor signal transduction histidine kinase. (1014 aa) |
| | Rcas_0124 | Ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein; KEGG: rrs:RoseRS_4577 ribonucleoside-triphosphate reductase. (769 aa) |
| | mutL | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (605 aa) |
| | Rcas_0089 | PFAM: protein of unknown function DUF86; KEGG: rrs:RoseRS_0899 protein of unknown function DUF86. (115 aa) |
| | Rcas_0076 | TIGRFAM: Acetyl coenzyme A synthetase (ADP forming) alpha domain; PFAM: CoA-binding domain protein; KEGG: rrs:RoseRS_4534 CoA-binding domain protein. (698 aa) |
| | eno | Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (429 aa) |
| | Rcas_0066 | PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rrs:RoseRS_4010 TRAP dicarboxylate transporter-DctP subunit. (403 aa) |
| | uvrA-2 | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (1043 aa) |
| | Rcas_4386 | TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: rrs:RoseRS_4018 oxidoreductase alpha (molybdopterin) subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (742 aa) |
| | Rcas_4360 | PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: rrs:RoseRS_0174 cobalamin (vitamin B12) biosynthesis CbiM protein. (328 aa) |
| | rplA | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (240 aa) |
| | rplJ | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (187 aa) |
| | Rcas_4312 | KEGG: rrs:RoseRS_4066 hypothetical protein. (163 aa) |
| | Rcas_4287 | PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: rrs:RoseRS_3600 fibronectin-binding A domain protein. (583 aa) |
| | Rcas_4275 | TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: rrs:RoseRS_3588 DNA polymerase III, delta prime subunit. (354 aa) |
| | tatA | Twin-arginine translocation protein, TatA/E family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. (68 aa) |
| | Rcas_4254 | KEGG: rrs:RoseRS_0006 hypothetical protein. (243 aa) |
| | Rcas_4209 | MCP methyltransferase, CheR-type with Tpr repeats; KEGG: rrs:RoseRS_0033 protein-glutamate O-methyltransferase; PFAM: MCP methyltransferase CheR-type; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein. (502 aa) |
| | Rcas_4197 | PFAM: ATPase associated with various cellular activities AAA_5; KEGG: rrs:RoseRS_0045 GTPase subunit of restriction endonuclease-like protein. (578 aa) |
| | Rcas_4139 | PFAM: ABC-2 type transporter; KEGG: rrs:RoseRS_3367 ABC-2 type transporter. (606 aa) |
| | Rcas_4111 | PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rrs:RoseRS_3299 FAD dependent oxidoreductase. (556 aa) |
| | Rcas_4102 | PFAM: carboxyl transferase; KEGG: rrs:RoseRS_3291 carboxyl transferase. (516 aa) |
| | Rcas_4094 | KEGG: rrs:RoseRS_0906 biotin carboxylase-like protein. (389 aa) |
| | Rcas_4063 | PFAM: UvrD/REP helicase; KEGG: rrs:RoseRS_2259 UvrD/REP helicase. (697 aa) |
| | Rcas_4041 | KEGG: rrs:RoseRS_1199 nitrogenase component I, alpha chain; TIGRFAM: nitrogenase alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1; Belongs to the NifD/NifK/NifE/NifN family. (476 aa) |
| | Rcas_4040 | Nitrogenase; PFAM: oxidoreductase/nitrogenase component 1; KEGG: rrs:RoseRS_1198 nitrogenase. (475 aa) |
| | rpsL | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. (144 aa) |
| | rpsG | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (157 aa) |
| | rplB | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (275 aa) |
| | rpsS | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (95 aa) |
| | rplV | Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). (113 aa) |
