Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Rcas_2309 | Rcas_3576 | Rcas_2309 | Rcas_3576 | PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: rrs:RoseRS_1552 thiamine pyrophosphate enzyme domain protein TPP-binding. | PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: rrs:RoseRS_1369 thiamine pyrophosphate enzyme domain protein TPP-binding. | 0.925 |
| Rcas_3576 | Rcas_2309 | Rcas_3576 | Rcas_2309 | PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: rrs:RoseRS_1369 thiamine pyrophosphate enzyme domain protein TPP-binding. | PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: rrs:RoseRS_1552 thiamine pyrophosphate enzyme domain protein TPP-binding. | 0.925 |
| Rcas_3834 | mutM | Rcas_3834 | Rcas_3836 | TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: rrs:RoseRS_1948 penicillin-binding protein, 1A family. | formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.423 |
| mutM | Rcas_3834 | Rcas_3836 | Rcas_3834 | formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: rrs:RoseRS_1948 penicillin-binding protein, 1A family. | 0.423 |