STRINGSTRING
Rcas_0105 Rcas_0105 Rcas_0117 Rcas_0117 Rcas_0594 Rcas_0594 Rcas_0701 Rcas_0701 Rcas_0702 Rcas_0702 Rcas_0952 Rcas_0952 Rcas_0953 Rcas_0953 Rcas_0982 Rcas_0982 Rcas_0983 Rcas_0983 Rcas_1556 Rcas_1556 Rcas_1557 Rcas_1557 Rcas_1887 Rcas_1887 Rcas_2019 Rcas_2019 Rcas_2308 Rcas_2308 Rcas_2309 Rcas_2309 Rcas_2411 Rcas_2411 Rcas_3079 Rcas_3079 Rcas_3080 Rcas_3080 Rcas_3081 Rcas_3081 Rcas_3163 Rcas_3163 Rcas_3206 Rcas_3206 Rcas_3219 Rcas_3219 Rcas_3315 Rcas_3315 Rcas_3504 Rcas_3504 Rcas_3515 Rcas_3515 Rcas_3576 Rcas_3576 Rcas_3577 Rcas_3577 Rcas_3773 Rcas_3773 Rcas_3829 Rcas_3829 Rcas_4052 Rcas_4052
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Rcas_0105PFAM: alpha/beta hydrolase fold; KEGG: rrs:RoseRS_4553 alpha/beta hydrolase fold. (372 aa)
Rcas_0117PFAM: aminotransferase class-III; KEGG: rrs:RoseRS_4570 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (453 aa)
Rcas_0594PFAM: pyruvate carboxyltransferase; KEGG: rrs:RoseRS_4162 pyruvate carboxyltransferase. (313 aa)
Rcas_0701PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rrs:RoseRS_4347 short-chain dehydrogenase/reductase SDR. (247 aa)
Rcas_0702KEGG: rrs:RoseRS_4348 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (396 aa)
Rcas_0952PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: rrs:RoseRS_3693 biotin/lipoyl attachment domain-containing protein. (151 aa)
Rcas_0953KEGG: rrs:RoseRS_3692 sodium ion-translocating decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit. (376 aa)
Rcas_0982TIGRFAM: putative hydroxymethylglutaryl-CoA synthase; PFAM: Hydroxymethylglutaryl-coenzyme A synthase domain; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: rrs:RoseRS_0430 putative hydroxymethylglutaryl-CoA synthase. (348 aa)
Rcas_0983KEGG: rrs:RoseRS_0429 acetyl-CoA acetyltransferase-like protein. (384 aa)
Rcas_1556TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: rrs:RoseRS_1967 acetolactate synthase, small subunit. (180 aa)
Rcas_1557TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rrs:RoseRS_1968 acetolactate synthase, large subunit, biosynthetic type. (581 aa)
Rcas_1887PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: rrs:RoseRS_2970 3-hydroxyacyl-CoA dehydrogenase, NAD-binding. (807 aa)
Rcas_2019PFAM: aminotransferase class-III; KEGG: rrs:RoseRS_1738 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (465 aa)
Rcas_2308PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rrs:RoseRS_1551 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein. (615 aa)
Rcas_2309PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: rrs:RoseRS_1552 thiamine pyrophosphate enzyme domain protein TPP-binding. (348 aa)
Rcas_2411Acetaldehyde dehydrogenase; Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds. (305 aa)
Rcas_3079TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; KEGG: rrs:RoseRS_2400 succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family. (226 aa)
Rcas_3080KEGG: rrs:RoseRS_2399 succinate dehydrogenase or fumarate reductase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase. (656 aa)
Rcas_3081TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rrs:RoseRS_2398 succinate dehydrogenase and fumarate reductase iron-sulfur protein. (249 aa)
Rcas_3163PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rrs:RoseRS_2302 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (261 aa)
Rcas_3206KEGG: rrs:RoseRS_3911 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (393 aa)
Rcas_3219PFAM: aminotransferase class-III; KEGG: rrs:RoseRS_3926 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (442 aa)
Rcas_3315PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: rrs:RoseRS_3886 phosphate butyryltransferase. (470 aa)
Rcas_3504PFAM: aldehyde dehydrogenase; KEGG: ana:all5022 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (474 aa)
Rcas_3515PFAM: pyruvate carboxyltransferase; KEGG: sru:SRU_1246 3-hydroxy-3-methylglutaryl-CoA lyase; Belongs to the alpha-IPM synthase/homocitrate synthase family. (297 aa)
Rcas_3576PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: rrs:RoseRS_1369 thiamine pyrophosphate enzyme domain protein TPP-binding. (249 aa)
Rcas_3577PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Transketolase domain protein; KEGG: rrs:RoseRS_1370 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein. (367 aa)
Rcas_3773PFAM: acetyl-CoA hydrolase/transferase; KEGG: rrs:RoseRS_0911 acetyl-CoA hydrolase/transferase. (431 aa)
Rcas_3829TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; KEGG: rrs:RoseRS_1953 acetoacetyl-CoA synthase. (657 aa)
Rcas_4052PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rrs:RoseRS_1213 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein. (1192 aa)
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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