(6 nodes) Replication factor A protein 2, and Replication factor-A protein 1, N-terminal network (Glycine max)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C6T0A0_SOYBN	Uncharacterized protein. (108 aa)
	I1JZI1_SOYBN	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (620 aa)
	I1M9R5_SOYBN	Uncharacterized protein. (292 aa)
	I1MWJ6_SOYBN	Uncharacterized protein. (277 aa)
	K7LF83_SOYBN	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (894 aa)
	K7LWV0_SOYBN	Uncharacterized protein. (277 aa)

Your Current Organism:

Glycine max

NCBI taxonomy Id: 3847
Other names: G. max, Glycine max (L.) Merr., soybean, soybeans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C6T0A0_SOYBN	I1JZI1_SOYBN	C6T0A0	I1JZI1	Uncharacterized protein.	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses.	0.943
C6T0A0_SOYBN	I1M9R5_SOYBN	C6T0A0	I1M9R5	Uncharacterized protein.	Uncharacterized protein.	0.935
C6T0A0_SOYBN	I1MWJ6_SOYBN	C6T0A0	I1MWJ6	Uncharacterized protein.	Uncharacterized protein.	0.935
C6T0A0_SOYBN	K7LF83_SOYBN	C6T0A0	K7LF83	Uncharacterized protein.	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses.	0.918
C6T0A0_SOYBN	K7LWV0_SOYBN	C6T0A0	K7LWV0	Uncharacterized protein.	Uncharacterized protein.	0.935
I1JZI1_SOYBN	C6T0A0_SOYBN	I1JZI1	C6T0A0	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses.	Uncharacterized protein.	0.943
I1JZI1_SOYBN	I1M9R5_SOYBN	I1JZI1	I1M9R5	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses.	Uncharacterized protein.	0.966
I1JZI1_SOYBN	I1MWJ6_SOYBN	I1JZI1	I1MWJ6	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses.	Uncharacterized protein.	0.966
I1JZI1_SOYBN	K7LF83_SOYBN	I1JZI1	K7LF83	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses.	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses.	0.908
I1JZI1_SOYBN	K7LWV0_SOYBN	I1JZI1	K7LWV0	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses.	Uncharacterized protein.	0.966
I1M9R5_SOYBN	C6T0A0_SOYBN	I1M9R5	C6T0A0	Uncharacterized protein.	Uncharacterized protein.	0.935
I1M9R5_SOYBN	I1JZI1_SOYBN	I1M9R5	I1JZI1	Uncharacterized protein.	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses.	0.966
I1M9R5_SOYBN	I1MWJ6_SOYBN	I1M9R5	I1MWJ6	Uncharacterized protein.	Uncharacterized protein.	0.900
I1M9R5_SOYBN	K7LF83_SOYBN	I1M9R5	K7LF83	Uncharacterized protein.	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses.	0.962
I1M9R5_SOYBN	K7LWV0_SOYBN	I1M9R5	K7LWV0	Uncharacterized protein.	Uncharacterized protein.	0.904
I1MWJ6_SOYBN	C6T0A0_SOYBN	I1MWJ6	C6T0A0	Uncharacterized protein.	Uncharacterized protein.	0.935
I1MWJ6_SOYBN	I1JZI1_SOYBN	I1MWJ6	I1JZI1	Uncharacterized protein.	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses.	0.966
I1MWJ6_SOYBN	I1M9R5_SOYBN	I1MWJ6	I1M9R5	Uncharacterized protein.	Uncharacterized protein.	0.900
I1MWJ6_SOYBN	K7LF83_SOYBN	I1MWJ6	K7LF83	Uncharacterized protein.	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses.	0.962
I1MWJ6_SOYBN	K7LWV0_SOYBN	I1MWJ6	K7LWV0	Uncharacterized protein.	Uncharacterized protein.	0.903