(47 nodes) CCR4-NOT complex network (Glycine max)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0R0FMN0	Uncharacterized protein. (858 aa)
	A0A0R0FWC0	Uncharacterized protein. (1046 aa)
	A0A0R0G317	NOT2_3_5 domain-containing protein. (663 aa)
	A0A0R0G885	Uncharacterized protein. (313 aa)
	A0A0R0H2J9	Uncharacterized protein. (1156 aa)
	A0A0R0H6J3	Uncharacterized protein. (1039 aa)
	A0A0R0HDH6	Uncharacterized protein. (98 aa)
	A0A0R0IH89	Uncharacterized protein. (144 aa)
	A0A0R0J669	Uncharacterized protein. (2405 aa)
	A0A0R0J8S6	Endo/exonuclease/phosphatase domain-containing protein. (287 aa)
	A0A0R0KB36	Uncharacterized protein. (95 aa)
	A0A0R0KHH3	Uncharacterized protein. (129 aa)
	A0A0R0KHR9	Uncharacterized protein. (1653 aa)
	A0A0R0KHV8	Uncharacterized protein. (2434 aa)
	A0A0R4J5S7	Uncharacterized protein. (325 aa)
	A0A368UII1	Uncharacterized protein. (567 aa)
	C6T8U3_SOYBN	Uncharacterized protein. (436 aa)
	I1JB78_SOYBN	Uncharacterized protein. (436 aa)
	I1JD46_SOYBN	Uncharacterized protein. (886 aa)
	I1JJC0_SOYBN	Uncharacterized protein. (316 aa)
	I1JQ66_SOYBN	Uncharacterized protein. (274 aa)
	I1JQF1_SOYBN	Uncharacterized protein. (602 aa)
	I1JU83_SOYBN	Uncharacterized protein. (273 aa)
	I1JZV8_SOYBN	RING-type domain-containing protein. (332 aa)
	I1K8P4_SOYBN	Uncharacterized protein. (273 aa)
	I1KGU2_SOYBN	Uncharacterized protein. (277 aa)
	I1KVK6_SOYBN	Uncharacterized protein. (281 aa)
	I1KYB0_SOYBN	Uncharacterized protein. (325 aa)
	I1L2J3_SOYBN	Uncharacterized protein. (600 aa)
	I1L8R3_SOYBN	Uncharacterized protein. (912 aa)
	I1LKN4_SOYBN	Uncharacterized protein. (284 aa)
	I1LR28_SOYBN	NOT2_3_5 domain-containing protein. (658 aa)
	I1LRJ8_SOYBN	Uncharacterized protein. (278 aa)
	I1LTY5_SOYBN	Uncharacterized protein. (309 aa)
	I1M4A3_SOYBN	Uncharacterized protein. (312 aa)
	I1ML38_SOYBN	Uncharacterized protein. (883 aa)
	I1MNT5_SOYBN	Uncharacterized protein. (886 aa)
	I1NAS4_SOYBN	Uncharacterized protein. (274 aa)
	I1NAZ4_SOYBN	Uncharacterized protein. (600 aa)
	K7KHY6_SOYBN	Thioredoxin domain-containing protein. (215 aa)
	GLYMA_U033400	NOT2_3_5 domain-containing protein. (660 aa)
	K7LZK8_SOYBN	Uncharacterized protein. (756 aa)
	K7M042_SOYBN	Uncharacterized protein. (859 aa)
	K7M3A4_SOYBN	NOT2_3_5 domain-containing protein. (628 aa)
	K7MFU9_SOYBN	Uncharacterized protein. (101 aa)
	K7MKS7_SOYBN	RING-type domain-containing protein. (337 aa)
	K7MXS5_SOYBN	Uncharacterized protein. (890 aa)

Your Current Organism:

Glycine max

NCBI taxonomy Id: 3847
Other names: G. max, Glycine max (L.) Merr., soybean, soybeans

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R0FMN0	A0A0R0FWC0	A0A0R0FMN0	A0A0R0FWC0	Uncharacterized protein.	Uncharacterized protein.	0.895
A0A0R0FMN0	A0A0R0G317	A0A0R0FMN0	A0A0R0G317	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.970
A0A0R0FMN0	A0A0R0G885	A0A0R0FMN0	A0A0R0G885	Uncharacterized protein.	Uncharacterized protein.	0.930
A0A0R0FMN0	A0A0R0H2J9	A0A0R0FMN0	A0A0R0H2J9	Uncharacterized protein.	Uncharacterized protein.	0.895
A0A0R0FMN0	A0A0R0H6J3	A0A0R0FMN0	A0A0R0H6J3	Uncharacterized protein.	Uncharacterized protein.	0.895
A0A0R0FMN0	A0A0R0HDH6	A0A0R0FMN0	A0A0R0HDH6	Uncharacterized protein.	Uncharacterized protein.	0.862
A0A0R0FMN0	A0A0R0IH89	A0A0R0FMN0	A0A0R0IH89	Uncharacterized protein.	Uncharacterized protein.	0.862
A0A0R0FMN0	A0A0R0J669	A0A0R0FMN0	A0A0R0J669	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A0R0FMN0	A0A0R0J8S6	A0A0R0FMN0	A0A0R0J8S6	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.735
A0A0R0FMN0	A0A0R0KB36	A0A0R0FMN0	A0A0R0KB36	Uncharacterized protein.	Uncharacterized protein.	0.847
A0A0R0FMN0	A0A0R0KHH3	A0A0R0FMN0	A0A0R0KHH3	Uncharacterized protein.	Uncharacterized protein.	0.854
A0A0R0FMN0	A0A0R0KHR9	A0A0R0FMN0	A0A0R0KHR9	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A0R0FMN0	A0A0R0KHV8	A0A0R0FMN0	A0A0R0KHV8	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A0R0FMN0	A0A0R4J5S7	A0A0R0FMN0	A0A0R4J5S7	Uncharacterized protein.	Uncharacterized protein.	0.930
A0A0R0FMN0	A0A368UII1	A0A0R0FMN0	A0A368UII1	Uncharacterized protein.	Uncharacterized protein.	0.872
A0A0R0FMN0	C6T8U3_SOYBN	A0A0R0FMN0	C6T8U3	Uncharacterized protein.	Uncharacterized protein.	0.994
A0A0R0FMN0	GLYMA_U033400	A0A0R0FMN0	K7LPS4	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.970
A0A0R0FMN0	I1JB78_SOYBN	A0A0R0FMN0	I1JB78	Uncharacterized protein.	Uncharacterized protein.	0.994
A0A0R0FMN0	I1JD46_SOYBN	A0A0R0FMN0	I1JD46	Uncharacterized protein.	Uncharacterized protein.	0.927
A0A0R0FMN0	I1JJC0_SOYBN	A0A0R0FMN0	I1JJC0	Uncharacterized protein.	Uncharacterized protein.	0.930