16 items (Glycine max) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0R0GC27	Uncharacterized protein. (751 aa)
	A0A0R0HSC1	LRRcap domain-containing protein. (287 aa)
	C6SVH9_SOYBN	Small nuclear ribonucleoprotein G. (79 aa)
	C6SXE4_SOYBN	Uncharacterized protein. (110 aa)
	I1JAI4_SOYBN	Uncharacterized protein. (1104 aa)
	I1JDT3_SOYBN	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (116 aa)
	I1JQE1_SOYBN	CPSF_A domain-containing protein. (1387 aa)
	I1JYT2_SOYBN	Matrin-type domain-containing protein. (509 aa)
	I1KAR1_SOYBN	Matrin-type domain-containing protein. (509 aa)
	I1KBP3_SOYBN	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	I1KZW4_SOYBN	Uncharacterized protein. (806 aa)
	I1LCB2_SOYBN	Small nuclear ribonucleoprotein Sm D2. (108 aa)
	I1M5W5_SOYBN	Matrin-type domain-containing protein. (350 aa)
	I1M6U9_SOYBN	Small nuclear ribonucleoprotein-associated protein. (281 aa)
	I1MCD5_SOYBN	Matrin-type domain-containing protein. (349 aa)
	I1MEF2_SOYBN	PSP domain-containing protein. (575 aa)

Your Current Organism:

Glycine max

NCBI taxonomy Id: 3847
Other names: G. max, Glycine max (L.) Merr., soybean, soybeans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R0GC27	A0A0R0HSC1	A0A0R0GC27	A0A0R0HSC1	Uncharacterized protein.	LRRcap domain-containing protein.	0.922
A0A0R0GC27	C6SVH9_SOYBN	A0A0R0GC27	C6SVH9	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.930
A0A0R0GC27	C6SXE4_SOYBN	A0A0R0GC27	C6SXE4	Uncharacterized protein.	Uncharacterized protein.	0.982
A0A0R0GC27	I1JAI4_SOYBN	A0A0R0GC27	I1JAI4	Uncharacterized protein.	Uncharacterized protein.	0.930
A0A0R0GC27	I1JDT3_SOYBN	A0A0R0GC27	I1JDT3	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.904
A0A0R0GC27	I1JQE1_SOYBN	A0A0R0GC27	I1JQE1	Uncharacterized protein.	CPSF_A domain-containing protein.	0.940
A0A0R0GC27	I1JYT2_SOYBN	A0A0R0GC27	I1JYT2	Uncharacterized protein.	Matrin-type domain-containing protein.	0.995
A0A0R0GC27	I1KAR1_SOYBN	A0A0R0GC27	I1KAR1	Uncharacterized protein.	Matrin-type domain-containing protein.	0.995
A0A0R0GC27	I1KBP3_SOYBN	A0A0R0GC27	I1KBP3	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.918
A0A0R0GC27	I1KZW4_SOYBN	A0A0R0GC27	I1KZW4	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A0R0GC27	I1LCB2_SOYBN	A0A0R0GC27	I1LCB2	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.901
A0A0R0GC27	I1M5W5_SOYBN	A0A0R0GC27	I1M5W5	Uncharacterized protein.	Matrin-type domain-containing protein.	0.994
A0A0R0GC27	I1M6U9_SOYBN	A0A0R0GC27	I1M6U9	Uncharacterized protein.	Small nuclear ribonucleoprotein-associated protein.	0.943
A0A0R0GC27	I1MCD5_SOYBN	A0A0R0GC27	I1MCD5	Uncharacterized protein.	Matrin-type domain-containing protein.	0.994
A0A0R0GC27	I1MEF2_SOYBN	A0A0R0GC27	I1MEF2	Uncharacterized protein.	PSP domain-containing protein.	0.949
A0A0R0HSC1	A0A0R0GC27	A0A0R0HSC1	A0A0R0GC27	LRRcap domain-containing protein.	Uncharacterized protein.	0.922
A0A0R0HSC1	C6SVH9_SOYBN	A0A0R0HSC1	C6SVH9	LRRcap domain-containing protein.	Small nuclear ribonucleoprotein G.	0.988
A0A0R0HSC1	C6SXE4_SOYBN	A0A0R0HSC1	C6SXE4	LRRcap domain-containing protein.	Uncharacterized protein.	0.991
A0A0R0HSC1	I1JAI4_SOYBN	A0A0R0HSC1	I1JAI4	LRRcap domain-containing protein.	Uncharacterized protein.	0.984
A0A0R0HSC1	I1JDT3_SOYBN	A0A0R0HSC1	I1JDT3	LRRcap domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.982