21 items (Glycine max) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C6SZ12_SOYBN	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
	C6TKG0_SOYBN	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (200 aa)
	C6ZJZ3_SOYBN	Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family. (237 aa)
	I1JD60_SOYBN	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (232 aa)
	I1JRU7_SOYBN	Uncharacterized protein. (1277 aa)
	I1L1R7_SOYBN	Uncharacterized protein. (262 aa)
	I1LAR7_SOYBN	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (205 aa)
	I1LUI7_SOYBN	Nuclear cap-binding protein subunit 2. (253 aa)
	I1M228_SOYBN	Eukaryotic translation initiation factor 3 subunit D; mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. In the eIF-3 complex, eif3d specifically recognizes and binds the 7- methylguanosine cap of a subset of mRNAs. (557 aa)
	I1M3Q3_SOYBN	Nuclear cap-binding protein subunit 2. (255 aa)
	I1MEK0_SOYBN	Eukaryotic translation initiation factor 3 subunit D; mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. In the eIF-3 complex, eif3d specifically recognizes and binds the 7- methylguanosine cap of a subset of mRNAs. (565 aa)
	I1MEZ1_SOYBN	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (234 aa)
	I1MLB1_SOYBN	MIF4G domain-containing protein. (863 aa)
	I1MNU7_SOYBN	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (235 aa)
	I1N7Z9_SOYBN	MIF4G domain-containing protein. (863 aa)
	I1NCF6_SOYBN	Uncharacterized protein. (1277 aa)
	K7K1W3_SOYBN	Uncharacterized protein. (68 aa)
	K7LJ72_SOYBN	Uncharacterized protein. (117 aa)
	K7MC53_SOYBN	Uncharacterized protein. (262 aa)
	K7MEI0_SOYBN	Sm domain-containing protein. (95 aa)
	K7N0H4_SOYBN	Uncharacterized protein. (268 aa)

Your Current Organism:

Glycine max

NCBI taxonomy Id: 3847
Other names: G. max, Glycine max (L.) Merr., soybean, soybeans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C6SZ12_SOYBN	C6ZJZ3_SOYBN	C6SZ12	C6ZJZ3	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.	0.552
C6SZ12_SOYBN	I1MEZ1_SOYBN	C6SZ12	I1MEZ1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.552
C6SZ12_SOYBN	K7MEI0_SOYBN	C6SZ12	K7MEI0	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Sm domain-containing protein.	0.544
C6TKG0_SOYBN	C6ZJZ3_SOYBN	C6TKG0	C6ZJZ3	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.	0.580
C6TKG0_SOYBN	I1JD60_SOYBN	C6TKG0	I1JD60	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.606
C6TKG0_SOYBN	I1JRU7_SOYBN	C6TKG0	I1JRU7	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein.	0.915
C6TKG0_SOYBN	I1LAR7_SOYBN	C6TKG0	I1LAR7	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.543
C6TKG0_SOYBN	I1LUI7_SOYBN	C6TKG0	I1LUI7	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Nuclear cap-binding protein subunit 2.	0.476
C6TKG0_SOYBN	I1M228_SOYBN	C6TKG0	I1M228	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Eukaryotic translation initiation factor 3 subunit D; mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. In the eIF-3 complex, eif3d specifically recognizes and binds the 7- methylguanosine cap of a subset of mRNAs.	0.411
C6TKG0_SOYBN	I1M3Q3_SOYBN	C6TKG0	I1M3Q3	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Nuclear cap-binding protein subunit 2.	0.476
C6TKG0_SOYBN	I1MEK0_SOYBN	C6TKG0	I1MEK0	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Eukaryotic translation initiation factor 3 subunit D; mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. In the eIF-3 complex, eif3d specifically recognizes and binds the 7- methylguanosine cap of a subset of mRNAs.	0.411
C6TKG0_SOYBN	I1MEZ1_SOYBN	C6TKG0	I1MEZ1	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.585
C6TKG0_SOYBN	I1MLB1_SOYBN	C6TKG0	I1MLB1	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	MIF4G domain-containing protein.	0.723
C6TKG0_SOYBN	I1MNU7_SOYBN	C6TKG0	I1MNU7	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.606
C6TKG0_SOYBN	I1N7Z9_SOYBN	C6TKG0	I1N7Z9	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	MIF4G domain-containing protein.	0.723
C6TKG0_SOYBN	I1NCF6_SOYBN	C6TKG0	I1NCF6	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein.	0.915
C6ZJZ3_SOYBN	C6SZ12_SOYBN	C6ZJZ3	C6SZ12	Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.552
C6ZJZ3_SOYBN	C6TKG0_SOYBN	C6ZJZ3	C6TKG0	Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.580
C6ZJZ3_SOYBN	I1JD60_SOYBN	C6ZJZ3	I1JD60	Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.606
C6ZJZ3_SOYBN	I1JRU7_SOYBN	C6ZJZ3	I1JRU7	Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein.	0.915