41 items (Glycine max) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C6SWW8_SOYBN	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (131 aa)
	A0A0R0EFT2	Uncharacterized protein. (474 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (165 aa)
	A0A0R0HN81	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (207 aa)
	LSM4-2	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (149 aa)
	LSM4-3	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (148 aa)
	LSM4-4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (149 aa)
	C6SVH9_SOYBN	Small nuclear ribonucleoprotein G. (79 aa)
	C6SYH7_SOYBN	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	C6SYQ7_SOYBN	Sm domain-containing protein. (88 aa)
	C6SYU8_SOYBN	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	C6T1E6_SOYBN	Small nuclear ribonucleoprotein G. (79 aa)
	C6TN35_SOYBN	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (115 aa)
	I1JDT3_SOYBN	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (116 aa)
	I1JFF6_SOYBN	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (206 aa)
	I1K1C9_SOYBN	WD_REPEATS_REGION domain-containing protein. (352 aa)
	I1K5I1_SOYBN	Small nuclear ribonucleoprotein Sm D2. (108 aa)
	I1KBP3_SOYBN	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	I1LCB2_SOYBN	Small nuclear ribonucleoprotein Sm D2. (108 aa)
	I1LNF9_SOYBN	Coilin_N domain-containing protein. (637 aa)
	I1M3U2_SOYBN	Uncharacterized protein. (1034 aa)
	I1M5U8_SOYBN	MPN domain-containing protein. (2358 aa)
	I1M7C6_SOYBN	Uncharacterized protein. (221 aa)
	I1M859_SOYBN	Uncharacterized protein. (391 aa)
	I1MCE8_SOYBN	MPN domain-containing protein. (2358 aa)
	I1MLN7_SOYBN	Nop domain-containing protein. (486 aa)
	I1MSQ9_SOYBN	Sm domain-containing protein. (78 aa)
	I1MUD6_SOYBN	WD_REPEATS_REGION domain-containing protein. (352 aa)
	I1N7K6_SOYBN	Nop domain-containing protein. (486 aa)
	I1N872_SOYBN	Uncharacterized protein. (588 aa)
	I1N9G0_SOYBN	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
	I1NI35_SOYBN	Small nuclear ribonucleoprotein Sm D2. (98 aa)
	K7K6W3_SOYBN	Uncharacterized protein. (612 aa)
	K7KAL2_SOYBN	Uncharacterized protein. (391 aa)
	K7LFM5_SOYBN	Uncharacterized protein. (221 aa)
	K7LM67_SOYBN	Uncharacterized protein. (457 aa)
	K7LUT6_SOYBN	Small nuclear ribonucleoprotein Sm D2. (88 aa)
	K7LW22_SOYBN	Ubiquitin-like domain-containing protein. (1041 aa)
	K7MF54_SOYBN	Uncharacterized protein. (590 aa)
	K7MHI2_SOYBN	Uncharacterized protein. (617 aa)
	K7MPD3_SOYBN	Uncharacterized protein. (544 aa)

Your Current Organism:

Glycine max

NCBI taxonomy Id: 3847
Other names: G. max, Glycine max (L.) Merr., soybean, soybeans

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R0EFT2	C6SVH9_SOYBN	A0A0R0EFT2	C6SVH9	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.742
A0A0R0EFT2	C6SWW8_SOYBN	A0A0R0EFT2	C6SWW8	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.742
A0A0R0EFT2	C6SYH7_SOYBN	A0A0R0EFT2	C6SYH7	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.478
A0A0R0EFT2	C6SYQ7_SOYBN	A0A0R0EFT2	C6SYQ7	Uncharacterized protein.	Sm domain-containing protein.	0.470
A0A0R0EFT2	C6SYU8_SOYBN	A0A0R0EFT2	C6SYU8	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.478
A0A0R0EFT2	C6T1E6_SOYBN	A0A0R0EFT2	C6T1E6	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.742
A0A0R0EFT2	C6TN35_SOYBN	A0A0R0EFT2	C6TN35	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.753
A0A0R0EFT2	I1JDT3_SOYBN	A0A0R0EFT2	I1JDT3	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.753
A0A0R0EFT2	I1K1C9_SOYBN	A0A0R0EFT2	I1K1C9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.573
A0A0R0EFT2	I1K5I1_SOYBN	A0A0R0EFT2	I1K5I1	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.420
A0A0R0EFT2	I1KBP3_SOYBN	A0A0R0EFT2	I1KBP3	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.478
A0A0R0EFT2	I1LCB2_SOYBN	A0A0R0EFT2	I1LCB2	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.420
A0A0R0EFT2	I1MSQ9_SOYBN	A0A0R0EFT2	I1MSQ9	Uncharacterized protein.	Sm domain-containing protein.	0.470
A0A0R0EFT2	I1MUD6_SOYBN	A0A0R0EFT2	I1MUD6	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.573
A0A0R0EFT2	I1N872_SOYBN	A0A0R0EFT2	I1N872	Uncharacterized protein.	Uncharacterized protein.	0.540
A0A0R0EFT2	I1N9G0_SOYBN	A0A0R0EFT2	I1N9G0	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.753
A0A0R0EFT2	I1NI35_SOYBN	A0A0R0EFT2	I1NI35	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.420
A0A0R0EFT2	K7K6W3_SOYBN	A0A0R0EFT2	K7K6W3	Uncharacterized protein.	Uncharacterized protein.	0.540
A0A0R0EFT2	K7LM67_SOYBN	A0A0R0EFT2	K7LM67	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A0R0EFT2	K7LUT6_SOYBN	A0A0R0EFT2	K7LUT6	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.420