(49 nodes) Regulation of seed germination network (Glycine max)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1LMQ2_SOYBN	Arginyl-tRNA--protein transferase; Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. Belongs to the R-transferase family. (619 aa)
	I1LSG6_SOYBN	LRR F-box protein MAX2a. (711 aa)
	I1LW38_SOYBN	RRM_2 domain-containing protein. (269 aa)
	I1LZP8_SOYBN	Uncharacterized protein. (484 aa)
	I1MK88_SOYBN	RRM domain-containing protein. (269 aa)
	I1MLC2_SOYBN	GRAM domain-containing protein. (272 aa)
	I1MQA4_SOYBN	C2 NT-type domain-containing protein. (861 aa)
	I1MTI6_SOYBN	RING-type E3 ubiquitin transferase. (676 aa)
	I1MU69_SOYBN	Uncharacterized protein. (470 aa)
	I1MWM7_SOYBN	Uncharacterized protein. (622 aa)
	I1MZ35_SOYBN	Arginyl-tRNA--protein transferase; Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. Belongs to the R-transferase family. (612 aa)
	I1N2H2_SOYBN	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. (2040 aa)
	I1N7Y6_SOYBN	GRAM domain-containing protein. (283 aa)
	I1NAX4_SOYBN	Uncharacterized protein. (507 aa)
	I1NB53_SOYBN	WD_REPEATS_REGION domain-containing protein. (389 aa)
	K7K3M7_SOYBN	BHLH domain-containing protein. (183 aa)
	K7KAI9_SOYBN	Uncharacterized protein. (602 aa)
	K7KKZ1_SOYBN	JmjC domain-containing protein. (522 aa)
	K7L517_SOYBN	C2 NT-type domain-containing protein. (878 aa)
	K7L519_SOYBN	Uncharacterized protein. (99 aa)
	K7LE44_SOYBN	C2 NT-type domain-containing protein. (858 aa)
	K7M689_SOYBN	Uncharacterized protein. (118 aa)
	K7M7G1_SOYBN	RRM_2 domain-containing protein. (272 aa)
	K7M8D7_SOYBN	Uncharacterized protein. (602 aa)
	A0A0R0ECE8	Uncharacterized protein. (528 aa)
	K7N361_SOYBN	Lipase; Belongs to the AB hydrolase superfamily. Lipase family. (435 aa)
	A0A0R0G344	Uncharacterized protein. (388 aa)
	A0A0R0JIN2	JmjC domain-containing protein. (52 aa)
	A0A0R0JIP6	Uncharacterized protein. (52 aa)
	A0A0R0JLX5	F-box_5 domain-containing protein. (718 aa)
	A0A0R0KME4	JmjC domain-containing protein. (529 aa)
	A0A368UID0	Uncharacterized protein. (523 aa)
	C6T0P6_SOYBN	Uncharacterized protein. (226 aa)
	MFTL	Mother of flowering locus T-like protein. (190 aa)
	I1J6F8_SOYBN	BHLH domain-containing protein. (458 aa)
	I1JC18_SOYBN	RING-type E3 ubiquitin transferase. (713 aa)
	I1JDF5_SOYBN	Uncharacterized protein. (326 aa)
	I1JKW3_SOYBN	BHLH transcription factor. (397 aa)
	I1JQL5_SOYBN	WD_REPEATS_REGION domain-containing protein. (408 aa)
	I1K3M7_SOYBN	Uncharacterized protein. (1030 aa)
	I1K5F5_SOYBN	C2 NT-type domain-containing protein. (855 aa)
	I1KCH7_SOYBN	RING-type E3 ubiquitin transferase. (683 aa)
	I1KHK5_SOYBN	RRM domain-containing protein. (267 aa)
	I1KJZ0_SOYBN	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. (2041 aa)
	I1KK08_SOYBN	Uncharacterized protein. (226 aa)
	I1KS30_SOYBN	Uncharacterized protein. (1030 aa)
	I1L367_SOYBN	Uncharacterized protein. (518 aa)
	I1LE02_SOYBN	Uncharacterized protein. (191 aa)
	I1LEK1_SOYBN	Lipase; Belongs to the AB hydrolase superfamily. Lipase family. (392 aa)

Your Current Organism:

Glycine max

NCBI taxonomy Id: 3847
Other names: G. max, Glycine max (L.) Merr., soybean, soybeans

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R0ECE8	A0A368UID0	A0A0R0ECE8	A0A368UID0	Uncharacterized protein.	Uncharacterized protein.	0.901
A0A0R0ECE8	I1L367_SOYBN	A0A0R0ECE8	I1L367	Uncharacterized protein.	Uncharacterized protein.	0.901
A0A368UID0	A0A0R0ECE8	A0A368UID0	A0A0R0ECE8	Uncharacterized protein.	Uncharacterized protein.	0.901
A0A368UID0	I1L367_SOYBN	A0A368UID0	I1L367	Uncharacterized protein.	Uncharacterized protein.	0.900
I1KHK5_SOYBN	I1LW38_SOYBN	I1KHK5	I1LW38	RRM domain-containing protein.	RRM_2 domain-containing protein.	0.479
I1KHK5_SOYBN	K7M7G1_SOYBN	I1KHK5	K7M7G1	RRM domain-containing protein.	RRM_2 domain-containing protein.	0.479
I1KJZ0_SOYBN	I1LMQ2_SOYBN	I1KJZ0	I1LMQ2	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	Arginyl-tRNA--protein transferase; Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. Belongs to the R-transferase family.	0.750
I1KJZ0_SOYBN	I1MZ35_SOYBN	I1KJZ0	I1MZ35	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	Arginyl-tRNA--protein transferase; Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. Belongs to the R-transferase family.	0.750
I1KJZ0_SOYBN	I1N2H2_SOYBN	I1KJZ0	I1N2H2	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.730
I1L367_SOYBN	A0A0R0ECE8	I1L367	A0A0R0ECE8	Uncharacterized protein.	Uncharacterized protein.	0.901
I1L367_SOYBN	A0A368UID0	I1L367	A0A368UID0	Uncharacterized protein.	Uncharacterized protein.	0.900
I1LMQ2_SOYBN	I1KJZ0_SOYBN	I1LMQ2	I1KJZ0	Arginyl-tRNA--protein transferase; Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. Belongs to the R-transferase family.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.750
I1LMQ2_SOYBN	I1N2H2_SOYBN	I1LMQ2	I1N2H2	Arginyl-tRNA--protein transferase; Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. Belongs to the R-transferase family.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.750
I1LW38_SOYBN	I1KHK5_SOYBN	I1LW38	I1KHK5	RRM_2 domain-containing protein.	RRM domain-containing protein.	0.479
I1LW38_SOYBN	I1MK88_SOYBN	I1LW38	I1MK88	RRM_2 domain-containing protein.	RRM domain-containing protein.	0.479
I1MK88_SOYBN	I1LW38_SOYBN	I1MK88	I1LW38	RRM domain-containing protein.	RRM_2 domain-containing protein.	0.479
I1MK88_SOYBN	K7M7G1_SOYBN	I1MK88	K7M7G1	RRM domain-containing protein.	RRM_2 domain-containing protein.	0.479
I1MZ35_SOYBN	I1KJZ0_SOYBN	I1MZ35	I1KJZ0	Arginyl-tRNA--protein transferase; Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. Belongs to the R-transferase family.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.750
I1MZ35_SOYBN	I1N2H2_SOYBN	I1MZ35	I1N2H2	Arginyl-tRNA--protein transferase; Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. Belongs to the R-transferase family.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.750
I1N2H2_SOYBN	I1KJZ0_SOYBN	I1N2H2	I1KJZ0	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.730