(6 nodes) Chloroplast photosystem I network (Glycine max)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C6SVU4_SOYBN	Uncharacterized protein. (164 aa)
	I1JY50_SOYBN	Uncharacterized protein. (184 aa)
	I1NCR6_SOYBN	CAAD domain-containing protein. (201 aa)
	K7KH61_SOYBN	CAAD domain-containing protein. (225 aa)
	C6SXP5_SOYBN	Uncharacterized protein. (166 aa)
	I1JVN0_SOYBN	Uncharacterized protein. (163 aa)

Your Current Organism:

Glycine max

NCBI taxonomy Id: 3847
Other names: G. max, Glycine max (L.) Merr., soybean, soybeans

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C6SVU4_SOYBN	C6SXP5_SOYBN	C6SVU4	C6SXP5	Uncharacterized protein.	Uncharacterized protein.	0.980
C6SVU4_SOYBN	I1JVN0_SOYBN	C6SVU4	I1JVN0	Uncharacterized protein.	Uncharacterized protein.	0.900
C6SVU4_SOYBN	I1JY50_SOYBN	C6SVU4	I1JY50	Uncharacterized protein.	Uncharacterized protein.	0.980
C6SVU4_SOYBN	I1NCR6_SOYBN	C6SVU4	I1NCR6	Uncharacterized protein.	CAAD domain-containing protein.	0.530
C6SVU4_SOYBN	K7KH61_SOYBN	C6SVU4	K7KH61	Uncharacterized protein.	CAAD domain-containing protein.	0.530
C6SXP5_SOYBN	C6SVU4_SOYBN	C6SXP5	C6SVU4	Uncharacterized protein.	Uncharacterized protein.	0.980
C6SXP5_SOYBN	I1JVN0_SOYBN	C6SXP5	I1JVN0	Uncharacterized protein.	Uncharacterized protein.	0.980
C6SXP5_SOYBN	I1JY50_SOYBN	C6SXP5	I1JY50	Uncharacterized protein.	Uncharacterized protein.	0.540
C6SXP5_SOYBN	I1NCR6_SOYBN	C6SXP5	I1NCR6	Uncharacterized protein.	CAAD domain-containing protein.	0.595
C6SXP5_SOYBN	K7KH61_SOYBN	C6SXP5	K7KH61	Uncharacterized protein.	CAAD domain-containing protein.	0.595
I1JVN0_SOYBN	C6SVU4_SOYBN	I1JVN0	C6SVU4	Uncharacterized protein.	Uncharacterized protein.	0.900
I1JVN0_SOYBN	C6SXP5_SOYBN	I1JVN0	C6SXP5	Uncharacterized protein.	Uncharacterized protein.	0.980
I1JVN0_SOYBN	I1JY50_SOYBN	I1JVN0	I1JY50	Uncharacterized protein.	Uncharacterized protein.	0.980
I1JVN0_SOYBN	I1NCR6_SOYBN	I1JVN0	I1NCR6	Uncharacterized protein.	CAAD domain-containing protein.	0.530
I1JVN0_SOYBN	K7KH61_SOYBN	I1JVN0	K7KH61	Uncharacterized protein.	CAAD domain-containing protein.	0.530
I1JY50_SOYBN	C6SVU4_SOYBN	I1JY50	C6SVU4	Uncharacterized protein.	Uncharacterized protein.	0.980
I1JY50_SOYBN	C6SXP5_SOYBN	I1JY50	C6SXP5	Uncharacterized protein.	Uncharacterized protein.	0.540
I1JY50_SOYBN	I1JVN0_SOYBN	I1JY50	I1JVN0	Uncharacterized protein.	Uncharacterized protein.	0.980
I1JY50_SOYBN	I1NCR6_SOYBN	I1JY50	I1NCR6	Uncharacterized protein.	CAAD domain-containing protein.	0.595
I1JY50_SOYBN	K7KH61_SOYBN	I1JY50	K7KH61	Uncharacterized protein.	CAAD domain-containing protein.	0.595