(35 nodes) Nuclear DNA replication network (Glycine max)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	K7LAN9_SOYBN	Uncharacterized protein. (592 aa)
	K7LCD9_SOYBN	Uncharacterized protein. (89 aa)
	K7LR09_SOYBN	Uncharacterized protein. (123 aa)
	K7LZ99_SOYBN	CDT1 domain-containing protein. (619 aa)
	K7M8D7_SOYBN	Uncharacterized protein. (602 aa)
	K7MGD4_SOYBN	MCM domain-containing protein. (182 aa)
	K7MIU9_SOYBN	CDT1 domain-containing protein. (488 aa)
	K7MPJ9_SOYBN	Sld5 domain-containing protein. (184 aa)
	K7MSR8_SOYBN	Uncharacterized protein. (589 aa)
	K7N147_SOYBN	MCM domain-containing protein. (199 aa)
	I1LJ93_SOYBN	DNA helicase; Belongs to the MCM family. (835 aa)
	I1LMR4_SOYBN	Sld5 domain-containing protein. (184 aa)
	I1LPZ2_SOYBN	DNA helicase; Belongs to the MCM family. (839 aa)
	I1LYB2_SOYBN	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Unwinds duplex DNA. Component of the meiotic recombination pathway. Seems to play a role in mediating chromosome homology search, chromosome pairing and synapsis at early stages and probably chromosome crossing-over at later stages in meiosis. Probably is involved in the repair of meiotic double strand breaks (DBSs) and in homologous recombination; Belongs to the RecA family. RAD51 subfamily. (344 aa)
	I1MS33_SOYBN	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Unwinds duplex DNA. Component of the meiotic recombination pathway. Seems to play a role in mediating chromosome homology search, chromosome pairing and synapsis at early stages and probably chromosome crossing-over at later stages in meiosis. Probably is involved in the repair of meiotic double strand breaks (DBSs) and in homologous recombination; Belongs to the RecA family. RAD51 subfamily. (343 aa)
	I1MT36_SOYBN	Rtf2 domain-containing protein. (363 aa)
	I1NAX1_SOYBN	Uncharacterized protein. (627 aa)
	K7K4M3_SOYBN	DNA polymerase. (1544 aa)
	K7K8U8_SOYBN	DNA_pol_B_exo1 domain-containing protein. (97 aa)
	K7K9Q4_SOYBN	Rtf2 domain-containing protein. (362 aa)
	K7KAI9_SOYBN	Uncharacterized protein. (602 aa)
	K7L321_SOYBN	zf-DNA_Pol domain-containing protein. (202 aa)
	I1L8C7_SOYBN	CDT1 domain-containing protein. (596 aa)
	I1L3S9_SOYBN	CDT1 domain-containing protein. (539 aa)
	I1KRF9_SOYBN	DNA helicase; Belongs to the MCM family. (782 aa)
	I1KJ81_SOYBN	Sld5 domain-containing protein. (199 aa)
	I1K328_SOYBN	DNA helicase; Belongs to the MCM family. (782 aa)
	I1JW26_SOYBN	Sld5 domain-containing protein. (199 aa)
	I1JQC5_SOYBN	Uncharacterized protein. (620 aa)
	I1JDF5_SOYBN	Uncharacterized protein. (326 aa)
	A0A0R0KNG9	Uncharacterized protein. (116 aa)
	A0A0R0JCV5	CDT1 domain-containing protein. (238 aa)
	A0A0R0HWW1	Uncharacterized protein. (140 aa)
	A0A0R0HS58	CDT1 domain-containing protein. (117 aa)
	A0A0R0G344	Uncharacterized protein. (388 aa)

Your Current Organism:

Glycine max

NCBI taxonomy Id: 3847
Other names: G. max, Glycine max (L.) Merr., soybean, soybeans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R0HS58	I1JW26_SOYBN	A0A0R0HS58	I1JW26	CDT1 domain-containing protein.	Sld5 domain-containing protein.	0.459
A0A0R0HS58	I1K328_SOYBN	A0A0R0HS58	I1K328	CDT1 domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.975
A0A0R0HS58	I1KJ81_SOYBN	A0A0R0HS58	I1KJ81	CDT1 domain-containing protein.	Sld5 domain-containing protein.	0.459
A0A0R0HS58	I1KRF9_SOYBN	A0A0R0HS58	I1KRF9	CDT1 domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.975
A0A0R0HS58	I1LJ93_SOYBN	A0A0R0HS58	I1LJ93	CDT1 domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.989
A0A0R0HS58	I1LMR4_SOYBN	A0A0R0HS58	I1LMR4	CDT1 domain-containing protein.	Sld5 domain-containing protein.	0.577
A0A0R0HS58	I1LPZ2_SOYBN	A0A0R0HS58	I1LPZ2	CDT1 domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.989
A0A0R0HS58	K7K4M3_SOYBN	A0A0R0HS58	K7K4M3	CDT1 domain-containing protein.	DNA polymerase.	0.433
A0A0R0HS58	K7K8U8_SOYBN	A0A0R0HS58	K7K8U8	CDT1 domain-containing protein.	DNA_pol_B_exo1 domain-containing protein.	0.433
A0A0R0HS58	K7L321_SOYBN	A0A0R0HS58	K7L321	CDT1 domain-containing protein.	zf-DNA_Pol domain-containing protein.	0.433
A0A0R0HS58	K7LAN9_SOYBN	A0A0R0HS58	K7LAN9	CDT1 domain-containing protein.	Uncharacterized protein.	0.846
A0A0R0HS58	K7LCD9_SOYBN	A0A0R0HS58	K7LCD9	CDT1 domain-containing protein.	Uncharacterized protein.	0.433
A0A0R0HS58	K7MGD4_SOYBN	A0A0R0HS58	K7MGD4	CDT1 domain-containing protein.	MCM domain-containing protein.	0.975
A0A0R0HS58	K7MPJ9_SOYBN	A0A0R0HS58	K7MPJ9	CDT1 domain-containing protein.	Sld5 domain-containing protein.	0.577
A0A0R0HS58	K7MSR8_SOYBN	A0A0R0HS58	K7MSR8	CDT1 domain-containing protein.	Uncharacterized protein.	0.846
A0A0R0HS58	K7N147_SOYBN	A0A0R0HS58	K7N147	CDT1 domain-containing protein.	MCM domain-containing protein.	0.975
A0A0R0HWW1	I1LYB2_SOYBN	A0A0R0HWW1	I1LYB2	Uncharacterized protein.	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Unwinds duplex DNA. Component of the meiotic recombination pathway. Seems to play a role in mediating chromosome homology search, chromosome pairing and synapsis at early stages and probably chromosome crossing-over at later stages in meiosis. Probably is involved in the repair of meiotic double strand breaks (DBSs) and in homologous recombination; Belongs to the RecA family. RAD51 subfamily.	0.579
A0A0R0HWW1	I1MS33_SOYBN	A0A0R0HWW1	I1MS33	Uncharacterized protein.	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Unwinds duplex DNA. Component of the meiotic recombination pathway. Seems to play a role in mediating chromosome homology search, chromosome pairing and synapsis at early stages and probably chromosome crossing-over at later stages in meiosis. Probably is involved in the repair of meiotic double strand breaks (DBSs) and in homologous recombination; Belongs to the RecA family. RAD51 subfamily.	0.579
A0A0R0JCV5	I1JW26_SOYBN	A0A0R0JCV5	I1JW26	CDT1 domain-containing protein.	Sld5 domain-containing protein.	0.459
A0A0R0JCV5	I1K328_SOYBN	A0A0R0JCV5	I1K328	CDT1 domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.975