(48 nodes) post-mRNA release spliceosomal complex network (Glycine max)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1J6R3_SOYBN	Uncharacterized protein. (306 aa)
	C6T3P2_SOYBN	Uncharacterized protein. (152 aa)
	C6SX62_SOYBN	Uncharacterized protein. (100 aa)
	A0A368UJU6	Uncharacterized protein. (364 aa)
	A0A368UIJ4	G-patch domain-containing protein. (850 aa)
	A0A0R0LGE6	Uncharacterized protein. (251 aa)
	A0A0R0KYU1	Uncharacterized protein. (147 aa)
	A0A0R0KHX7	Uncharacterized protein. (253 aa)
	K7N1H4_SOYBN	CCHC-type domain-containing protein. (194 aa)
	K7MHI8_SOYBN	G-patch domain-containing protein. (862 aa)
	K7N341_SOYBN	Uncharacterized protein. (784 aa)
	K7MKZ3_SOYBN	Uncharacterized protein. (767 aa)
	K7M1P8_SOYBN	TPR_REGION domain-containing protein. (919 aa)
	K7LYU8_SOYBN	Uncharacterized protein. (601 aa)
	K7M5I4_SOYBN	Uncharacterized protein. (299 aa)
	K7LUR0_SOYBN	Uncharacterized protein. (215 aa)
	K7MBA9_SOYBN	Uncharacterized protein. (100 aa)
	A0A0R0KGD3	Uncharacterized protein. (205 aa)
	A0A0R0KFU8	Uncharacterized protein. (207 aa)
	A0A0R0KFJ1	Uncharacterized protein. (388 aa)
	A0A0R0KE94	Uncharacterized protein. (221 aa)
	A0A0R0JL42	Uncharacterized protein. (301 aa)
	A0A0R0J2J6	Uncharacterized protein. (201 aa)
	A0A0R0ISS5	Uncharacterized protein. (208 aa)
	A0A0R0FPU4	Uncharacterized protein. (196 aa)
	A0A0R0FJU9	Uncharacterized protein. (540 aa)
	A0A0R0F8R7	Uncharacterized protein. (319 aa)
	A0A0R0F8M0	CCHC-type domain-containing protein. (159 aa)
	A0A0R0EZX4	Uncharacterized protein. (114 aa)
	A0A0R0EZE0	Uncharacterized protein. (289 aa)
	A0A0R0EIY5	Uncharacterized protein. (139 aa)
	A0A0R0E7L6	Uncharacterized protein. (460 aa)
	K7LDA5_SOYBN	Uncharacterized protein. (299 aa)
	A0A0R0KHL4	CCHC-type domain-containing protein. (309 aa)
	K7KSA7_SOYBN	Uncharacterized protein. (399 aa)
	K7KHE5_SOYBN	Uncharacterized protein. (385 aa)
	I1NF98_SOYBN	Uncharacterized protein. (313 aa)
	I1NBM6_SOYBN	G-patch domain-containing protein. (304 aa)
	I1MEB0_SOYBN	TPR_REGION domain-containing protein. (918 aa)
	I1LZN2_SOYBN	Uncharacterized protein. (762 aa)
	I1LGA1_SOYBN	Uncharacterized protein. (695 aa)
	I1LF43_SOYBN	Uncharacterized protein. (314 aa)
	I1LEL4_SOYBN	Uncharacterized protein. (786 aa)
	I1LBZ3_SOYBN	Uncharacterized protein. (152 aa)
	I1L0R9_SOYBN	Uncharacterized protein. (86 aa)
	I1JR13_SOYBN	G-patch domain-containing protein. (304 aa)
	I1JDX9_SOYBN	Uncharacterized protein. (306 aa)
	I1JAC1_SOYBN	Uncharacterized protein. (695 aa)

Your Current Organism:

Glycine max

NCBI taxonomy Id: 3847
Other names: G. max, Glycine max (L.) Merr., soybean, soybeans

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R0E7L6	I1JAC1_SOYBN	A0A0R0E7L6	I1JAC1	Uncharacterized protein.	Uncharacterized protein.	0.619
A0A0R0E7L6	I1LEL4_SOYBN	A0A0R0E7L6	I1LEL4	Uncharacterized protein.	Uncharacterized protein.	0.423
A0A0R0E7L6	I1LF43_SOYBN	A0A0R0E7L6	I1LF43	Uncharacterized protein.	Uncharacterized protein.	0.535
A0A0R0E7L6	I1LGA1_SOYBN	A0A0R0E7L6	I1LGA1	Uncharacterized protein.	Uncharacterized protein.	0.619
A0A0R0E7L6	I1MEB0_SOYBN	A0A0R0E7L6	I1MEB0	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.627
A0A0R0E7L6	I1NF98_SOYBN	A0A0R0E7L6	I1NF98	Uncharacterized protein.	Uncharacterized protein.	0.535
A0A0R0E7L6	K7KHE5_SOYBN	A0A0R0E7L6	K7KHE5	Uncharacterized protein.	Uncharacterized protein.	0.535
A0A0R0E7L6	K7KSA7_SOYBN	A0A0R0E7L6	K7KSA7	Uncharacterized protein.	Uncharacterized protein.	0.535
A0A0R0E7L6	K7M1P8_SOYBN	A0A0R0E7L6	K7M1P8	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.627
A0A0R0E7L6	K7N341_SOYBN	A0A0R0E7L6	K7N341	Uncharacterized protein.	Uncharacterized protein.	0.423
A0A0R0EIY5	I1JAC1_SOYBN	A0A0R0EIY5	I1JAC1	Uncharacterized protein.	Uncharacterized protein.	0.619
A0A0R0EIY5	I1LEL4_SOYBN	A0A0R0EIY5	I1LEL4	Uncharacterized protein.	Uncharacterized protein.	0.423
A0A0R0EIY5	I1LF43_SOYBN	A0A0R0EIY5	I1LF43	Uncharacterized protein.	Uncharacterized protein.	0.535
A0A0R0EIY5	I1LGA1_SOYBN	A0A0R0EIY5	I1LGA1	Uncharacterized protein.	Uncharacterized protein.	0.619
A0A0R0EIY5	I1MEB0_SOYBN	A0A0R0EIY5	I1MEB0	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.627
A0A0R0EIY5	I1NF98_SOYBN	A0A0R0EIY5	I1NF98	Uncharacterized protein.	Uncharacterized protein.	0.535
A0A0R0EIY5	K7KHE5_SOYBN	A0A0R0EIY5	K7KHE5	Uncharacterized protein.	Uncharacterized protein.	0.535
A0A0R0EIY5	K7KSA7_SOYBN	A0A0R0EIY5	K7KSA7	Uncharacterized protein.	Uncharacterized protein.	0.535
A0A0R0EIY5	K7M1P8_SOYBN	A0A0R0EIY5	K7M1P8	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.627
A0A0R0EIY5	K7N341_SOYBN	A0A0R0EIY5	K7N341	Uncharacterized protein.	Uncharacterized protein.	0.423