(11 nodes) Gamma-secretase complex network (Glycine max)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1KBJ6_SOYBN	Uncharacterized protein. (136 aa)
	A0A0R0EVX5	Ncstrn_small domain-containing protein. (663 aa)
	I1JK51_SOYBN	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (385 aa)
	I1JY18_SOYBN	Uncharacterized protein. (149 aa)
	I1JZI3_SOYBN	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (456 aa)
	I1LJR0_SOYBN	Uncharacterized protein. (249 aa)
	I1LMA4_SOYBN	Ncstrn_small domain-containing protein. (669 aa)
	I1LQF1_SOYBN	Uncharacterized protein. (249 aa)
	I1MT67_SOYBN	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (457 aa)
	I1N8G3_SOYBN	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (417 aa)
	K7LJJ3_SOYBN	Uncharacterized protein. (165 aa)

Your Current Organism:

Glycine max

NCBI taxonomy Id: 3847
Other names: G. max, Glycine max (L.) Merr., soybean, soybeans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R0EVX5	I1JK51_SOYBN	A0A0R0EVX5	I1JK51	Ncstrn_small domain-containing protein.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.998
A0A0R0EVX5	I1JY18_SOYBN	A0A0R0EVX5	I1JY18	Ncstrn_small domain-containing protein.	Uncharacterized protein.	0.998
A0A0R0EVX5	I1JZI3_SOYBN	A0A0R0EVX5	I1JZI3	Ncstrn_small domain-containing protein.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.998
A0A0R0EVX5	I1KBJ6_SOYBN	A0A0R0EVX5	I1KBJ6	Ncstrn_small domain-containing protein.	Uncharacterized protein.	0.998
A0A0R0EVX5	I1LJR0_SOYBN	A0A0R0EVX5	I1LJR0	Ncstrn_small domain-containing protein.	Uncharacterized protein.	0.984
A0A0R0EVX5	I1LQF1_SOYBN	A0A0R0EVX5	I1LQF1	Ncstrn_small domain-containing protein.	Uncharacterized protein.	0.984
A0A0R0EVX5	I1MT67_SOYBN	A0A0R0EVX5	I1MT67	Ncstrn_small domain-containing protein.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.998
A0A0R0EVX5	I1N8G3_SOYBN	A0A0R0EVX5	I1N8G3	Ncstrn_small domain-containing protein.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.998
I1JK51_SOYBN	A0A0R0EVX5	I1JK51	A0A0R0EVX5	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Ncstrn_small domain-containing protein.	0.998
I1JK51_SOYBN	I1JY18_SOYBN	I1JK51	I1JY18	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Uncharacterized protein.	0.984
I1JK51_SOYBN	I1KBJ6_SOYBN	I1JK51	I1KBJ6	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Uncharacterized protein.	0.984
I1JK51_SOYBN	I1LJR0_SOYBN	I1JK51	I1LJR0	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Uncharacterized protein.	0.971
I1JK51_SOYBN	I1LMA4_SOYBN	I1JK51	I1LMA4	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Ncstrn_small domain-containing protein.	0.998
I1JK51_SOYBN	I1LQF1_SOYBN	I1JK51	I1LQF1	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Uncharacterized protein.	0.971
I1JK51_SOYBN	K7LJJ3_SOYBN	I1JK51	K7LJJ3	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Uncharacterized protein.	0.962
I1JY18_SOYBN	A0A0R0EVX5	I1JY18	A0A0R0EVX5	Uncharacterized protein.	Ncstrn_small domain-containing protein.	0.998
I1JY18_SOYBN	I1JK51_SOYBN	I1JY18	I1JK51	Uncharacterized protein.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.984
I1JY18_SOYBN	I1JZI3_SOYBN	I1JY18	I1JZI3	Uncharacterized protein.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.984
I1JY18_SOYBN	I1KBJ6_SOYBN	I1JY18	I1KBJ6	Uncharacterized protein.	Uncharacterized protein.	0.544
I1JY18_SOYBN	I1LJR0_SOYBN	I1JY18	I1LJR0	Uncharacterized protein.	Uncharacterized protein.	0.994