(14 nodes) CAF1 family ribonuclease network (Glycine max)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0R0HDH6	Uncharacterized protein. (98 aa)
	I1JQ66_SOYBN	Uncharacterized protein. (274 aa)
	I1JU83_SOYBN	Uncharacterized protein. (273 aa)
	I1K8P4_SOYBN	Uncharacterized protein. (273 aa)
	I1KGU2_SOYBN	Uncharacterized protein. (277 aa)
	I1KVK6_SOYBN	Uncharacterized protein. (281 aa)
	I1LKN4_SOYBN	Uncharacterized protein. (284 aa)
	I1LRJ8_SOYBN	Uncharacterized protein. (278 aa)
	I1LTY5_SOYBN	Uncharacterized protein. (309 aa)
	I1M4A3_SOYBN	Uncharacterized protein. (312 aa)
	I1NAS4_SOYBN	Uncharacterized protein. (274 aa)
	K7LAC5_SOYBN	Uncharacterized protein. (718 aa)
	K7LAL5_SOYBN	Uncharacterized protein. (619 aa)
	K7MQH1_SOYBN	Uncharacterized protein. (714 aa)

Your Current Organism:

Glycine max

NCBI taxonomy Id: 3847
Other names: G. max, Glycine max (L.) Merr., soybean, soybeans

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R0HDH6	I1JQ66_SOYBN	A0A0R0HDH6	I1JQ66	Uncharacterized protein.	Uncharacterized protein.	0.566
A0A0R0HDH6	I1JU83_SOYBN	A0A0R0HDH6	I1JU83	Uncharacterized protein.	Uncharacterized protein.	0.545
A0A0R0HDH6	I1K8P4_SOYBN	A0A0R0HDH6	I1K8P4	Uncharacterized protein.	Uncharacterized protein.	0.545
A0A0R0HDH6	I1KGU2_SOYBN	A0A0R0HDH6	I1KGU2	Uncharacterized protein.	Uncharacterized protein.	0.548
A0A0R0HDH6	I1KVK6_SOYBN	A0A0R0HDH6	I1KVK6	Uncharacterized protein.	Uncharacterized protein.	0.548
A0A0R0HDH6	I1LKN4_SOYBN	A0A0R0HDH6	I1LKN4	Uncharacterized protein.	Uncharacterized protein.	0.562
A0A0R0HDH6	I1LRJ8_SOYBN	A0A0R0HDH6	I1LRJ8	Uncharacterized protein.	Uncharacterized protein.	0.563
A0A0R0HDH6	I1LTY5_SOYBN	A0A0R0HDH6	I1LTY5	Uncharacterized protein.	Uncharacterized protein.	0.563
A0A0R0HDH6	I1M4A3_SOYBN	A0A0R0HDH6	I1M4A3	Uncharacterized protein.	Uncharacterized protein.	0.563
A0A0R0HDH6	I1NAS4_SOYBN	A0A0R0HDH6	I1NAS4	Uncharacterized protein.	Uncharacterized protein.	0.566
I1JQ66_SOYBN	A0A0R0HDH6	I1JQ66	A0A0R0HDH6	Uncharacterized protein.	Uncharacterized protein.	0.566
I1JQ66_SOYBN	I1JU83_SOYBN	I1JQ66	I1JU83	Uncharacterized protein.	Uncharacterized protein.	0.553
I1JQ66_SOYBN	I1K8P4_SOYBN	I1JQ66	I1K8P4	Uncharacterized protein.	Uncharacterized protein.	0.553
I1JQ66_SOYBN	I1KGU2_SOYBN	I1JQ66	I1KGU2	Uncharacterized protein.	Uncharacterized protein.	0.553
I1JQ66_SOYBN	I1KVK6_SOYBN	I1JQ66	I1KVK6	Uncharacterized protein.	Uncharacterized protein.	0.554
I1JQ66_SOYBN	I1LKN4_SOYBN	I1JQ66	I1LKN4	Uncharacterized protein.	Uncharacterized protein.	0.548
I1JQ66_SOYBN	I1LRJ8_SOYBN	I1JQ66	I1LRJ8	Uncharacterized protein.	Uncharacterized protein.	0.548
I1JQ66_SOYBN	I1LTY5_SOYBN	I1JQ66	I1LTY5	Uncharacterized protein.	Uncharacterized protein.	0.547
I1JQ66_SOYBN	I1M4A3_SOYBN	I1JQ66	I1M4A3	Uncharacterized protein.	Uncharacterized protein.	0.548
I1JQ66_SOYBN	I1NAS4_SOYBN	I1JQ66	I1NAS4	Uncharacterized protein.	Uncharacterized protein.	0.543