(12 nodes) Carbon-oxygen lyase activity, acting on phosphates network (Botryotinia calthae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A4Y8D563	Uncharacterized protein. (197 aa)
	A0A4Y8D455	3-phosphoshikimate 1-carboxyvinyltransferase; The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis. In the 2nd section; belongs to the EPSP synthase family. In the 4th section; belongs to the type-I 3-dehydroquinase family. In the N-terminal section; belongs to the dehydroquinate synthase family. (1576 aa)
	A0A4Y8DBC2	Chorismate synthase. (442 aa)
	A0A4Y8CX15	Uncharacterized protein. (309 aa)
	A0A4Y8CW42	Uncharacterized protein. (262 aa)
	A0A4Y8CW03	Uncharacterized protein. (507 aa)
	A0A4Y8CPJ5	FtsJ domain-containing protein. (494 aa)
	A0A4Y8DBP8	Uncharacterized protein. (670 aa)
	A0A4Y8DHV1	Uncharacterized protein. (222 aa)
	A0A4Y8D2K2	DHQ_synthase domain-containing protein. (517 aa)
	A0A4Y8D9Q5	Uncharacterized protein. (537 aa)
	A0A4Y8D912	Uncharacterized protein. (317 aa)

Your Current Organism:

Botryotinia calthae

NCBI taxonomy Id: 38488
Other names: B. calthae, Botrytis calthae, Botrytis calthae Hennebert

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4Y8CPJ5	A0A4Y8DBC2	FtsJ domain-containing protein.	Chorismate synthase.	0.725
A0A4Y8CW03	A0A4Y8CW42	Uncharacterized protein.	Uncharacterized protein.	0.619
A0A4Y8CW42	A0A4Y8CW03	Uncharacterized protein.	Uncharacterized protein.	0.619
A0A4Y8CW42	A0A4Y8CX15	Uncharacterized protein.	Uncharacterized protein.	0.546
A0A4Y8CX15	A0A4Y8CW42	Uncharacterized protein.	Uncharacterized protein.	0.546
A0A4Y8D2K2	A0A4Y8DBC2	DHQ_synthase domain-containing protein.	Chorismate synthase.	0.886
A0A4Y8D2K2	A0A4Y8DBP8	DHQ_synthase domain-containing protein.	Uncharacterized protein.	0.896
A0A4Y8D455	A0A4Y8DBC2	3-phosphoshikimate 1-carboxyvinyltransferase; The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis. In the 2nd section; belongs to the EPSP synthase family. In the 4th section; belongs to the type-I 3-dehydroquinase family. In the N-terminal section; belongs to the dehydroquinate synthase family.	Chorismate synthase.	0.963
A0A4Y8D563	A0A4Y8DBC2	Uncharacterized protein.	Chorismate synthase.	0.725
A0A4Y8D9Q5	A0A4Y8DBC2	Uncharacterized protein.	Chorismate synthase.	0.574
A0A4Y8DBC2	A0A4Y8CPJ5	Chorismate synthase.	FtsJ domain-containing protein.	0.725
A0A4Y8DBC2	A0A4Y8D2K2	Chorismate synthase.	DHQ_synthase domain-containing protein.	0.886
A0A4Y8DBC2	A0A4Y8D455	Chorismate synthase.	3-phosphoshikimate 1-carboxyvinyltransferase; The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis. In the 2nd section; belongs to the EPSP synthase family. In the 4th section; belongs to the type-I 3-dehydroquinase family. In the N-terminal section; belongs to the dehydroquinate synthase family.	0.963
A0A4Y8DBC2	A0A4Y8D563	Chorismate synthase.	Uncharacterized protein.	0.725
A0A4Y8DBC2	A0A4Y8D9Q5	Chorismate synthase.	Uncharacterized protein.	0.574
A0A4Y8DBC2	A0A4Y8DBP8	Chorismate synthase.	Uncharacterized protein.	0.725
A0A4Y8DBP8	A0A4Y8D2K2	Uncharacterized protein.	DHQ_synthase domain-containing protein.	0.896
A0A4Y8DBP8	A0A4Y8DBC2	Uncharacterized protein.	Chorismate synthase.	0.725