(9 nodes) Cysteine biosynthetic process network (Botryotinia calthae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A4Y8DIA3	PALP domain-containing protein. (377 aa)
	A0A4Y8CLA5	SOR_SNZ domain-containing protein; Belongs to the PdxS/SNZ family. (378 aa)
	A0A4Y8CSK4	Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate. (205 aa)
	A0A4Y8D3T5	AB hydrolase-1 domain-containing protein. (524 aa)
	A0A4Y8D3X3	PALP domain-containing protein. (453 aa)
	MET3	Sulfate adenylyltransferase; Catalyzes the first intracellular reaction of sulfate assimilation, forming adenosine-5'-phosphosulfate (APS) from inorganic sulfate and ATP. Plays an important role in sulfate activation as a component of the biosynthesis pathway of sulfur-containing amino acids. In the N-terminal section; belongs to the sulfate adenylyltransferase family. (576 aa)
	A0A4Y8D5V0	PAPS_reduct domain-containing protein. (308 aa)
	A0A4Y8D606	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. (535 aa)
	A0A4Y8D7C8	Uncharacterized protein. (685 aa)

Your Current Organism:

Botryotinia calthae

NCBI taxonomy Id: 38488
Other names: B. calthae, Botrytis calthae, Botrytis calthae Hennebert

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A4Y8CSK4	A0A4Y8D3X3	A0A4Y8CSK4	A0A4Y8D3X3	Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.	PALP domain-containing protein.	0.674
A0A4Y8CSK4	A0A4Y8D5V0	A0A4Y8CSK4	A0A4Y8D5V0	Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.	PAPS_reduct domain-containing protein.	0.996
A0A4Y8CSK4	A0A4Y8D606	A0A4Y8CSK4	A0A4Y8D606	Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.674
A0A4Y8CSK4	A0A4Y8DIA3	A0A4Y8CSK4	A0A4Y8DIA3	Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.	PALP domain-containing protein.	0.674
A0A4Y8CSK4	MET3	A0A4Y8CSK4	A0A4Y8D447	Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.	Sulfate adenylyltransferase; Catalyzes the first intracellular reaction of sulfate assimilation, forming adenosine-5'-phosphosulfate (APS) from inorganic sulfate and ATP. Plays an important role in sulfate activation as a component of the biosynthesis pathway of sulfur-containing amino acids. In the N-terminal section; belongs to the sulfate adenylyltransferase family.	0.995
A0A4Y8D3T5	A0A4Y8D606	A0A4Y8D3T5	A0A4Y8D606	AB hydrolase-1 domain-containing protein.	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.706
A0A4Y8D3T5	A0A4Y8DIA3	A0A4Y8D3T5	A0A4Y8DIA3	AB hydrolase-1 domain-containing protein.	PALP domain-containing protein.	0.607
A0A4Y8D3X3	A0A4Y8CSK4	A0A4Y8D3X3	A0A4Y8CSK4	PALP domain-containing protein.	Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.	0.674
A0A4Y8D3X3	A0A4Y8D5V0	A0A4Y8D3X3	A0A4Y8D5V0	PALP domain-containing protein.	PAPS_reduct domain-containing protein.	0.484
A0A4Y8D3X3	A0A4Y8D606	A0A4Y8D3X3	A0A4Y8D606	PALP domain-containing protein.	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.804
A0A4Y8D3X3	A0A4Y8D7C8	A0A4Y8D3X3	A0A4Y8D7C8	PALP domain-containing protein.	Uncharacterized protein.	0.959
A0A4Y8D3X3	A0A4Y8DIA3	A0A4Y8D3X3	A0A4Y8DIA3	PALP domain-containing protein.	PALP domain-containing protein.	0.903
A0A4Y8D5V0	A0A4Y8CSK4	A0A4Y8D5V0	A0A4Y8CSK4	PAPS_reduct domain-containing protein.	Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.	0.996
A0A4Y8D5V0	A0A4Y8D3X3	A0A4Y8D5V0	A0A4Y8D3X3	PAPS_reduct domain-containing protein.	PALP domain-containing protein.	0.484
A0A4Y8D5V0	A0A4Y8D606	A0A4Y8D5V0	A0A4Y8D606	PAPS_reduct domain-containing protein.	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.552
A0A4Y8D5V0	A0A4Y8DIA3	A0A4Y8D5V0	A0A4Y8DIA3	PAPS_reduct domain-containing protein.	PALP domain-containing protein.	0.484
A0A4Y8D5V0	MET3	A0A4Y8D5V0	A0A4Y8D447	PAPS_reduct domain-containing protein.	Sulfate adenylyltransferase; Catalyzes the first intracellular reaction of sulfate assimilation, forming adenosine-5'-phosphosulfate (APS) from inorganic sulfate and ATP. Plays an important role in sulfate activation as a component of the biosynthesis pathway of sulfur-containing amino acids. In the N-terminal section; belongs to the sulfate adenylyltransferase family.	0.966
A0A4Y8D606	A0A4Y8CSK4	A0A4Y8D606	A0A4Y8CSK4	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.	0.674
A0A4Y8D606	A0A4Y8D3T5	A0A4Y8D606	A0A4Y8D3T5	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	AB hydrolase-1 domain-containing protein.	0.706
A0A4Y8D606	A0A4Y8D3X3	A0A4Y8D606	A0A4Y8D3X3	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	PALP domain-containing protein.	0.804