STRINGSTRING
der der smc smc cmk cmk Q91_0734 Q91_0734 Q91_0735 Q91_0735 Q91_0736 Q91_0736 Q91_0738 Q91_0738 Q91_0739 Q91_0739 Q91_0740 Q91_0740 ppnP ppnP Q91_0743 Q91_0743 scpB scpB Q91_0745 Q91_0745 Q91_1951 Q91_1951
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
derGTP-binding factor; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. (468 aa)
smcCondensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1166 aa)
cmk3-phosphoshikimate 1-carboxyvinyltransferase. (224 aa)
Q91_0734TPR repeat-containing protein. (162 aa)
Q91_0735Hypothetical protein. (169 aa)
Q91_0736ATP-dependent helicase YoaA-like protein. (651 aa)
Q91_0738Putative translation factor YciO-like protein; Belongs to the SUA5 family. (211 aa)
Q91_0739SpoIVFB, Zn-dependent protease, transmembrane protein. (219 aa)
Q91_0740Tryptophanyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (406 aa)
ppnPHypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions. (104 aa)
Q91_0743Excinuclease ABC, B subunit; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. (270 aa)
scpBCondensin subunit ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. (203 aa)
Q91_0745Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. (264 aa)
Q91_1951Sugar kinase transferase, PfkB. (331 aa)
Your Current Organism:
Cycloclasticus sp. P1
NCBI taxonomy Id: 385025
Other names: C. sp. P1
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