(13 nodes) Aminobenzoate degradation network (Cycloclasticus sp. P1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Q91_0488	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (481 aa)
	Q91_0489	Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (481 aa)
	Q91_0491	Hypothetical protein. (77 aa)
	Q91_0875	Ring-hydroxylating dioxygenase large subunit. (393 aa)
	andAc	Ring hydroxylating dioxygenase, alpha subunit/Rieske (2Fe-2S) protein. (421 aa)
	Q91_0966	Aromatic oxygenase small subunit. (161 aa)
	Q91_1203	enoyl-CoA hydratase/isomerase. (253 aa)
	Q91_1468	Ring hydroxylating dioxygenase, alpha subunit:Rieske. (418 aa)
	Q91_1469	Aromatic oxygenase small subunit. (161 aa)
	Q91_2196	Ring hydroxylating dioxygenase, alpha subunit/Rieske. (416 aa)
	Q91_2230	Aromatic-ring-hydroxylating dioxygenase beta subunit. (161 aa)
	Q91_2231	Biphenyl dioxygenase large subunit. (417 aa)
	Q91_2233	Ring hydroxylating dioxygenase alpha subunit. (396 aa)

Your Current Organism:

Cycloclasticus sp. P1

NCBI taxonomy Id: 385025
Other names: C. sp. P1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Q91_0488	Q91_0489	Q91_0488	Q91_0489	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.958
Q91_0489	Q91_0488	Q91_0489	Q91_0488	Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.958
Q91_0489	Q91_0491	Q91_0489	Q91_0491	Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Hypothetical protein.	0.481
Q91_0491	Q91_0489	Q91_0491	Q91_0489	Hypothetical protein.	Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.481
Q91_0875	Q91_0966	Q91_0875	Q91_0966	Ring-hydroxylating dioxygenase large subunit.	Aromatic oxygenase small subunit.	0.964
Q91_0875	Q91_1468	Q91_0875	Q91_1468	Ring-hydroxylating dioxygenase large subunit.	Ring hydroxylating dioxygenase, alpha subunit:Rieske.	0.921
Q91_0875	Q91_1469	Q91_0875	Q91_1469	Ring-hydroxylating dioxygenase large subunit.	Aromatic oxygenase small subunit.	0.964
Q91_0875	Q91_2196	Q91_0875	Q91_2196	Ring-hydroxylating dioxygenase large subunit.	Ring hydroxylating dioxygenase, alpha subunit/Rieske.	0.922
Q91_0875	Q91_2230	Q91_0875	Q91_2230	Ring-hydroxylating dioxygenase large subunit.	Aromatic-ring-hydroxylating dioxygenase beta subunit.	0.964
Q91_0875	Q91_2231	Q91_0875	Q91_2231	Ring-hydroxylating dioxygenase large subunit.	Biphenyl dioxygenase large subunit.	0.922
Q91_0875	Q91_2233	Q91_0875	Q91_2233	Ring-hydroxylating dioxygenase large subunit.	Ring hydroxylating dioxygenase alpha subunit.	0.907
Q91_0875	andAc	Q91_0875	Q91_0964	Ring-hydroxylating dioxygenase large subunit.	Ring hydroxylating dioxygenase, alpha subunit/Rieske (2Fe-2S) protein.	0.920
Q91_0966	Q91_0875	Q91_0966	Q91_0875	Aromatic oxygenase small subunit.	Ring-hydroxylating dioxygenase large subunit.	0.964
Q91_0966	Q91_1468	Q91_0966	Q91_1468	Aromatic oxygenase small subunit.	Ring hydroxylating dioxygenase, alpha subunit:Rieske.	0.983
Q91_0966	Q91_1469	Q91_0966	Q91_1469	Aromatic oxygenase small subunit.	Aromatic oxygenase small subunit.	0.901
Q91_0966	Q91_2196	Q91_0966	Q91_2196	Aromatic oxygenase small subunit.	Ring hydroxylating dioxygenase, alpha subunit/Rieske.	0.983
Q91_0966	Q91_2230	Q91_0966	Q91_2230	Aromatic oxygenase small subunit.	Aromatic-ring-hydroxylating dioxygenase beta subunit.	0.900
Q91_0966	Q91_2231	Q91_0966	Q91_2231	Aromatic oxygenase small subunit.	Biphenyl dioxygenase large subunit.	0.983
Q91_0966	Q91_2233	Q91_0966	Q91_2233	Aromatic oxygenase small subunit.	Ring hydroxylating dioxygenase alpha subunit.	0.966
Q91_0966	andAc	Q91_0966	Q91_0964	Aromatic oxygenase small subunit.	Ring hydroxylating dioxygenase, alpha subunit/Rieske (2Fe-2S) protein.	0.994