(14 nodes) Mixed, incl. Protein deubiquitination involved in ubiquitin-dependent protein catabolic process, and Regulation of protein deubiquitination network (Alligator sinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TNIP3	TNFAIP3-interacting protein 3 isoform X1. (408 aa)
	OTUD4	OTU domain-containing protein 4 isoform X1. (1109 aa)
	LOC102377887	RING finger protein 11-like. (138 aa)
	LOC102369457	RING finger protein 151-like. (288 aa)
	ZRANB1	LOW QUALITY PROTEIN: ubiquitin thioesterase ZRANB1. (714 aa)
	MAP3K9	Mitogen-activated protein kinase kinase kinase. (1095 aa)
	OTUD7B	OTU domain-containing protein 7B. (866 aa)
	TNFAIP3	Tumor necrosis factor alpha-induced protein 3 isoform X1. (817 aa)
	NFATC4	Nuclear factor of activated T-cells, cytoplasmic 4 isoform X1. (831 aa)
	SACS	LOW QUALITY PROTEIN: sacsin. (4504 aa)
	TAX1BP1	Tax1-binding protein 1. (817 aa)
	LOC102375854	Optineurin-like. (117 aa)
	TNIP1	TNFAIP3-interacting protein 1. (524 aa)
	RNF216	E3 ubiquitin-protein ligase RNF216 isoform X1. (970 aa)

Your Current Organism:

Alligator sinensis

NCBI taxonomy Id: 38654
Other names: A. sinensis, Chinese alligator, MNHN 6494

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102375854	NFATC4	A0A3Q0GF20	A0A1U7SLI9	Optineurin-like.	Nuclear factor of activated T-cells, cytoplasmic 4 isoform X1.	0.551
LOC102375854	RNF216	A0A3Q0GF20	A0A3Q0GQ76	Optineurin-like.	E3 ubiquitin-protein ligase RNF216 isoform X1.	0.524
LOC102375854	TAX1BP1	A0A3Q0GF20	A0A1U8D5Z9	Optineurin-like.	Tax1-binding protein 1.	0.484
LOC102375854	TNIP1	A0A3Q0GF20	A0A3Q0GF32	Optineurin-like.	TNFAIP3-interacting protein 1.	0.449
LOC102375854	TNIP3	A0A3Q0GF20	A0A1U7RGT1	Optineurin-like.	TNFAIP3-interacting protein 3 isoform X1.	0.449
LOC102377887	TAX1BP1	A0A1U7RT15	A0A1U8D5Z9	RING finger protein 11-like.	Tax1-binding protein 1.	0.627
LOC102377887	TNFAIP3	A0A1U7RT15	A0A1U7SGZ2	RING finger protein 11-like.	Tumor necrosis factor alpha-induced protein 3 isoform X1.	0.578
MAP3K9	TNFAIP3	A0A1U7S449	A0A1U7SGZ2	Mitogen-activated protein kinase kinase kinase.	Tumor necrosis factor alpha-induced protein 3 isoform X1.	0.467
MAP3K9	ZRANB1	A0A1U7S449	A0A1U7RZI9	Mitogen-activated protein kinase kinase kinase.	LOW QUALITY PROTEIN: ubiquitin thioesterase ZRANB1.	0.458
NFATC4	LOC102375854	A0A1U7SLI9	A0A3Q0GF20	Nuclear factor of activated T-cells, cytoplasmic 4 isoform X1.	Optineurin-like.	0.551
NFATC4	RNF216	A0A1U7SLI9	A0A3Q0GQ76	Nuclear factor of activated T-cells, cytoplasmic 4 isoform X1.	E3 ubiquitin-protein ligase RNF216 isoform X1.	0.488
OTUD4	RNF216	A0A1U7RPR6	A0A3Q0GQ76	OTU domain-containing protein 4 isoform X1.	E3 ubiquitin-protein ligase RNF216 isoform X1.	0.528
OTUD4	SACS	A0A1U7RPR6	A0A1U7SP74	OTU domain-containing protein 4 isoform X1.	LOW QUALITY PROTEIN: sacsin.	0.582
OTUD7B	TNIP1	A0A1U7S9B4	A0A3Q0GF32	OTU domain-containing protein 7B.	TNFAIP3-interacting protein 1.	0.526
OTUD7B	TNIP3	A0A1U7S9B4	A0A1U7RGT1	OTU domain-containing protein 7B.	TNFAIP3-interacting protein 3 isoform X1.	0.526
RNF216	LOC102375854	A0A3Q0GQ76	A0A3Q0GF20	E3 ubiquitin-protein ligase RNF216 isoform X1.	Optineurin-like.	0.524
RNF216	NFATC4	A0A3Q0GQ76	A0A1U7SLI9	E3 ubiquitin-protein ligase RNF216 isoform X1.	Nuclear factor of activated T-cells, cytoplasmic 4 isoform X1.	0.488
RNF216	OTUD4	A0A3Q0GQ76	A0A1U7RPR6	E3 ubiquitin-protein ligase RNF216 isoform X1.	OTU domain-containing protein 4 isoform X1.	0.528
RNF216	SACS	A0A3Q0GQ76	A0A1U7SP74	E3 ubiquitin-protein ligase RNF216 isoform X1.	LOW QUALITY PROTEIN: sacsin.	0.636
SACS	OTUD4	A0A1U7SP74	A0A1U7RPR6	LOW QUALITY PROTEIN: sacsin.	OTU domain-containing protein 4 isoform X1.	0.582