46 items (Alligator sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UBXN4	UBX domain-containing protein 4. (551 aa)
	SEL1L	Protein sel-1 homolog 1. (800 aa)
	AMFR	E3 ubiquitin-protein ligase AMFR isoform X2. (474 aa)
	LOC102385096	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family. (216 aa)
	UBXN2B	UBX domain-containing protein 2B. (410 aa)
	DERL1	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family. (252 aa)
	DERL2	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family. (252 aa)
	NPLOC4	Nuclear protein localization protein 4 homolog isoform X1. (609 aa)
	RNF145	RING finger protein 145. (770 aa)
	SYVN1	E3 ubiquitin-protein ligase synoviolin. (627 aa)
	SPATA5L1	Spermatogenesis-associated protein 5-like protein 1; Belongs to the AAA ATPase family. (628 aa)
	LOC102382860	E3 ubiquitin-protein ligase AMFR-like. (96 aa)
	IQCA1	Dynein regulatory complex protein 11 isoform X1. (838 aa)
	ASPSCR1	Tether containing UBX domain for GLUT4 isoform X1. (467 aa)
	RNF185	E3 ubiquitin-protein ligase RNF185. (194 aa)
	UBXN11	UBX domain-containing protein 11. (486 aa)
	ERLEC1	Endoplasmic reticulum lectin 1. (417 aa)
	UFD1	Ubiquitin recognition factor in ER-associated degradation protein 1. (302 aa)
	SEL1L3	Protein sel-1 homolog 3 isoform X1. (1090 aa)
	UBXN2A	UBX domain-containing protein 2A isoform X1. (258 aa)
	LOC102385071	Vegetative cell wall protein gp1-like isoform X1. (310 aa)
	CHFR	LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase CHFR. (653 aa)
	UBE4A	Ubiquitin conjugation factor E4 A isoform X1. (1072 aa)
	AUP1	Ancient ubiquitous protein 1. (428 aa)
	OS9	Protein OS-9. (575 aa)
	IQCA1L	IQ and AAA domain-containing protein 1-like. (714 aa)
	LOC102379017	RING finger protein 145-like. (779 aa)
	FAF2	FAS-associated factor 2 isoform X1. (466 aa)
	UBXN6	UBX domain-containing protein 6 isoform X1. (441 aa)
	SVIP	Small VCP/p97-interacting protein. (69 aa)
	YOD1	Ubiquitin thioesterase OTU1. (265 aa)
	LOC112550297	Uncharacterized protein LOC112550297. (164 aa)
	SPATA5	Spermatogenesis-associated protein 5 isoform X1. (831 aa)
	DDC	aromatic-L-amino-acid decarboxylase isoform X3. (1106 aa)
	PLAA	Phospholipase A-2-activating protein isoform X1. (782 aa)
	VCP	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family. (761 aa)
	LRP2BP	LRP2-binding protein isoform X1. (336 aa)
	UBAC2	Ubiquitin-associated domain-containing protein 2. (290 aa)
	LOC102370558	Erlin-2 isoform X1. (356 aa)
	SEL1L2	Protein sel-1 homolog 2. (606 aa)
	UBE4B	Ubiquitin conjugation factor E4 B isoform X1. (1347 aa)
	UBXN10	LOW QUALITY PROTEIN: UBX domain-containing protein 10. (290 aa)
	NSFL1C	NSFL1 cofactor p47. (396 aa)
	ATXN3	Ataxin-3 isoform X1. (381 aa)
	UBXN1	UBX domain-containing protein 1. (208 aa)
	UBXN7	UBX domain-containing protein 7. (460 aa)

Your Current Organism:

Alligator sinensis

NCBI taxonomy Id: 38654
Other names: A. sinensis, Chinese alligator, MNHN 6494

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMFR	AUP1	A0A1U7RU08	A0A3Q0FKD2	E3 ubiquitin-protein ligase AMFR isoform X2.	Ancient ubiquitous protein 1.	0.466
AMFR	DERL1	A0A1U7RU08	A0A1U7RZE0	E3 ubiquitin-protein ligase AMFR isoform X2.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.930
AMFR	DERL2	A0A1U7RU08	A0A1U7S0S9	E3 ubiquitin-protein ligase AMFR isoform X2.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.808
AMFR	ERLEC1	A0A1U7RU08	A0A1U8CZI3	E3 ubiquitin-protein ligase AMFR isoform X2.	Endoplasmic reticulum lectin 1.	0.806
AMFR	FAF2	A0A1U7RU08	A0A3Q0FWE8	E3 ubiquitin-protein ligase AMFR isoform X2.	FAS-associated factor 2 isoform X1.	0.556
AMFR	LOC102382860	A0A1U7RU08	A0A1U7SJU9	E3 ubiquitin-protein ligase AMFR isoform X2.	E3 ubiquitin-protein ligase AMFR-like.	0.597
AMFR	LOC102385071	A0A1U7RU08	A0A1U8DJI1	E3 ubiquitin-protein ligase AMFR isoform X2.	Vegetative cell wall protein gp1-like isoform X1.	0.625
AMFR	LOC102385096	A0A1U7RU08	A0A1U7RVW0	E3 ubiquitin-protein ligase AMFR isoform X2.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.808
AMFR	LOC112550297	A0A1U7RU08	A0A3Q0GPC4	E3 ubiquitin-protein ligase AMFR isoform X2.	Uncharacterized protein LOC112550297.	0.534
AMFR	LRP2BP	A0A1U7RU08	A0A3Q0GVN9	E3 ubiquitin-protein ligase AMFR isoform X2.	LRP2-binding protein isoform X1.	0.534
AMFR	NPLOC4	A0A1U7RU08	A0A1U7S524	E3 ubiquitin-protein ligase AMFR isoform X2.	Nuclear protein localization protein 4 homolog isoform X1.	0.498
AMFR	OS9	A0A1U7RU08	A0A3Q0FLG7	E3 ubiquitin-protein ligase AMFR isoform X2.	Protein OS-9.	0.806
AMFR	SEL1L	A0A1U7RU08	A0A1U7RGK4	E3 ubiquitin-protein ligase AMFR isoform X2.	Protein sel-1 homolog 1.	0.799
AMFR	SEL1L2	A0A1U7RU08	A0A3Q0H6V0	E3 ubiquitin-protein ligase AMFR isoform X2.	Protein sel-1 homolog 2.	0.779
AMFR	SEL1L3	A0A1U7RU08	A0A1U8DE12	E3 ubiquitin-protein ligase AMFR isoform X2.	Protein sel-1 homolog 3 isoform X1.	0.757
AMFR	SPATA5	A0A1U7RU08	A0A3Q0GQU0	E3 ubiquitin-protein ligase AMFR isoform X2.	Spermatogenesis-associated protein 5 isoform X1.	0.759
AMFR	SPATA5L1	A0A1U7RU08	A0A1U7SHA8	E3 ubiquitin-protein ligase AMFR isoform X2.	Spermatogenesis-associated protein 5-like protein 1; Belongs to the AAA ATPase family.	0.759
AMFR	UBAC2	A0A1U7RU08	A0A3Q0GY64	E3 ubiquitin-protein ligase AMFR isoform X2.	Ubiquitin-associated domain-containing protein 2.	0.525
AMFR	UBXN1	A0A1U7RU08	A0A3Q0HJM5	E3 ubiquitin-protein ligase AMFR isoform X2.	UBX domain-containing protein 1.	0.684
AMFR	UFD1	A0A1U7RU08	A0A1U8D9Q5	E3 ubiquitin-protein ligase AMFR isoform X2.	Ubiquitin recognition factor in ER-associated degradation protein 1.	0.583