17 items (Alligator sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EIF4EBP3	Eukaryotic translation initiation factor 4E-binding protein 3. (74 aa)
	LOC102379089	Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (1127 aa)
	LARP1	La-related protein 1 isoform X1. (923 aa)
	EIF4EBP1	Eukaryotic translation initiation factor 4E-binding protein 1. (79 aa)
	POLR2D	DNA-directed RNA polymerase II subunit RPB4. (104 aa)
	TBL2	Transducin beta-like protein 2. (278 aa)
	SYT11	Synaptotagmin-11 isoform X1. (373 aa)
	EIF3F	Eukaryotic translation initiation factor 3 subunit F; Belongs to the eIF-3 subunit F family. (235 aa)
	TRIM32	E3 ubiquitin-protein ligase TRIM32. (647 aa)
	ZPR1	Zinc finger protein ZPR1. (448 aa)
	EIF5	Eukaryotic translation initiation factor 5. (429 aa)
	EIF2B5	Translation initiation factor eIF-2B subunit epsilon. (683 aa)
	EIF3B	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family. (776 aa)
	CUNH8orf88	Uncharacterized protein C8orf88 homolog. (222 aa)
	ANGEL1	Protein angel homolog 1. (576 aa)
	POLR2G	DNA-directed RNA polymerase II subunit RPB7. (170 aa)
	EIF4EBP2	Eukaryotic translation initiation factor 4E-binding protein 2. (93 aa)

Your Current Organism:

Alligator sinensis

NCBI taxonomy Id: 38654
Other names: A. sinensis, Chinese alligator, MNHN 6494

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIF2B5	EIF3B	A0A1U7RBX2	A0A1U7SB73	Translation initiation factor eIF-2B subunit epsilon.	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	0.500
EIF2B5	EIF5	A0A1U7RBX2	A0A1U7RDM4	Translation initiation factor eIF-2B subunit epsilon.	Eukaryotic translation initiation factor 5.	0.804
EIF2B5	LOC102379089	A0A1U7RBX2	A0A3Q0FX45	Translation initiation factor eIF-2B subunit epsilon.	Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.455
EIF3B	EIF2B5	A0A1U7SB73	A0A1U7RBX2	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	Translation initiation factor eIF-2B subunit epsilon.	0.500
EIF3B	EIF3F	A0A1U7SB73	A0A3Q0HCW1	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	Eukaryotic translation initiation factor 3 subunit F; Belongs to the eIF-3 subunit F family.	0.999
EIF3B	EIF5	A0A1U7SB73	A0A1U7RDM4	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	Eukaryotic translation initiation factor 5.	0.999
EIF3B	LOC102379089	A0A1U7SB73	A0A3Q0FX45	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.999
EIF3F	EIF3B	A0A3Q0HCW1	A0A1U7SB73	Eukaryotic translation initiation factor 3 subunit F; Belongs to the eIF-3 subunit F family.	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	0.999
EIF3F	EIF5	A0A3Q0HCW1	A0A1U7RDM4	Eukaryotic translation initiation factor 3 subunit F; Belongs to the eIF-3 subunit F family.	Eukaryotic translation initiation factor 5.	0.991
EIF3F	LOC102379089	A0A3Q0HCW1	A0A3Q0FX45	Eukaryotic translation initiation factor 3 subunit F; Belongs to the eIF-3 subunit F family.	Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.999
EIF4EBP2	EIF4EBP3	A0A1U7S9L6	A0A1U7S3T2	Eukaryotic translation initiation factor 4E-binding protein 2.	Eukaryotic translation initiation factor 4E-binding protein 3.	0.904
EIF4EBP3	EIF4EBP2	A0A1U7S3T2	A0A1U7S9L6	Eukaryotic translation initiation factor 4E-binding protein 3.	Eukaryotic translation initiation factor 4E-binding protein 2.	0.904
EIF5	EIF2B5	A0A1U7RDM4	A0A1U7RBX2	Eukaryotic translation initiation factor 5.	Translation initiation factor eIF-2B subunit epsilon.	0.804
EIF5	EIF3B	A0A1U7RDM4	A0A1U7SB73	Eukaryotic translation initiation factor 5.	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	0.999
EIF5	EIF3F	A0A1U7RDM4	A0A3Q0HCW1	Eukaryotic translation initiation factor 5.	Eukaryotic translation initiation factor 3 subunit F; Belongs to the eIF-3 subunit F family.	0.991
EIF5	LOC102379089	A0A1U7RDM4	A0A3Q0FX45	Eukaryotic translation initiation factor 5.	Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.999
LOC102379089	EIF2B5	A0A3Q0FX45	A0A1U7RBX2	Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Translation initiation factor eIF-2B subunit epsilon.	0.455
LOC102379089	EIF3B	A0A3Q0FX45	A0A1U7SB73	Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	0.999
LOC102379089	EIF3F	A0A3Q0FX45	A0A3Q0HCW1	Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Eukaryotic translation initiation factor 3 subunit F; Belongs to the eIF-3 subunit F family.	0.999
LOC102379089	EIF5	A0A3Q0FX45	A0A1U7RDM4	Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Eukaryotic translation initiation factor 5.	0.999