65 items (Alligator sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102383290	Histone H1-like. (286 aa)
	KDM3A	Lysine-specific demethylase 3A isoform X1. (1327 aa)
	LOC102386665	Histone H1.01-like. (222 aa)
	ATRX	Transcriptional regulator ATRX isoform X1. (2604 aa)
	TOX2	TOX high mobility group box family member 2 isoform X1. (488 aa)
	EOMES	Eomesodermin homolog isoform X1. (414 aa)
	HMGN5	High mobility group nucleosome-binding domain-containing protein 5 isoform X1. (105 aa)
	PAX6	Paired box protein Pax-6 isoform X1. (436 aa)
	THRB	Thyroid hormone receptor beta isoform X1. (391 aa)
	LOC102375552	Lysine-specific demethylase 5A-like. (867 aa)
	LOC102383432	Lysine-specific demethylase 5A. (767 aa)
	MYOG	Myogenin. (227 aa)
	MYOD1	Myogenic factor. (293 aa)
	LOC102376616	Histone H1-like. (159 aa)
	SUZ12	Polycomb protein SUZ12. (624 aa)
	XBP1	X-box-binding protein 1. (137 aa)
	NR1H2	Oxysterols receptor LXR-beta isoform X1. (438 aa)
	HMGN1	Non-histone chromosomal protein HMG-14 isoform X1. (107 aa)
	TBR1	T-box brain protein 1. (536 aa)
	LOC102378831	Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. (372 aa)
	LOC102368844	Histone H1x. (180 aa)
	PRDM14	PR domain zinc finger protein 14. (319 aa)
	KDM6B	LOW QUALITY PROTEIN: lysine-specific demethylase 6B. (1098 aa)
	LOC102367730	Lysine-specific demethylase 6A-like isoform X1. (242 aa)
	TOX4	TOX high mobility group box family member 4. (672 aa)
	SBNO2	Protein strawberry notch homolog 2 isoform X1. (1435 aa)
	CREBBP	CREB-binding protein. (2468 aa)
	ZNF276	Zinc finger protein 276. (552 aa)
	DHX9	ATP-dependent RNA helicase A isoform X1. (1209 aa)
	LOC102375865	LOW QUALITY PROTEIN: histone H1.01-like. (215 aa)
	JMJD1C	Probable JmjC domain-containing histone demethylation protein 2C isoform X1. (2499 aa)
	POLE3	DNA polymerase epsilon subunit 3. (143 aa)
	EP300	Histone acetyltransferase p300 isoform X1. (2149 aa)
	LOC102388687	LOW QUALITY PROTEIN: histone H1-like. (216 aa)
	LEMD3	Inner nuclear membrane protein Man1. (540 aa)
	SRF	Serum response factor isoform X1. (412 aa)
	APEX1	DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. (318 aa)
	WBP2NL	Postacrosomal sheath WW domain-binding protein. (285 aa)
	KDM3B	LOW QUALITY PROTEIN: lysine-specific demethylase 3B. (1682 aa)
	LOC102375845	Histone H1.01-like. (157 aa)
	RUVBL2	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (551 aa)
	WBP2	WW domain-binding protein 2 isoform X1. (263 aa)
	SIRT6	NAD-dependent protein deacetylase sirtuin-6. (285 aa)
	SBNO1	Protein strawberry notch homolog 1 isoform X1. (1408 aa)
	HMGN2	Non-histone chromosomal protein HMG-17. (88 aa)
	GRHL1	LOW QUALITY PROTEIN: grainyhead-like protein 1 homolog. (636 aa)
	THRA	Thyroid hormone receptor alpha isoform X1. (429 aa)
	NUP50	Nuclear pore complex protein Nup50 isoform X1. (471 aa)
	TOX3	TOX high mobility group box family member 3. (547 aa)
	KDM6A	Lysine-specific demethylase 6A isoform X1. (1020 aa)
	LOC102373889	Core histone macro-H2A.2 isoform X1. (417 aa)
	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit. (930 aa)
	LOC112550395	Histone H1.11R-like. (140 aa)
	PPARGC1A	Peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1. (810 aa)
	LEMD2	LEM domain-containing protein 2. (530 aa)
	STAT3	Signal transducer and activator of transcription. (771 aa)
	HR	Lysine-specific demethylase hairless isoform X1. (1458 aa)
	TOX	Thymocyte selection-associated high mobility group box protein TOX isoform X1. (544 aa)
	GATA1	LOW QUALITY PROTEIN: erythroid transcription factor. (323 aa)
	VAX2	Ventral anterior homeobox 2. (263 aa)
	RCC1	Regulator of chromosome condensation. (430 aa)
	HMGN3	High mobility group nucleosome-binding domain-containing protein 3 isoform X1. (150 aa)
	NR1H3	LOW QUALITY PROTEIN: oxysterols receptor LXR-alpha. (414 aa)
	LOC102386428	Histone H1.0. (259 aa)
	GRHL2	Grainyhead-like protein 2 homolog isoform X1. (636 aa)

Your Current Organism:

Alligator sinensis

NCBI taxonomy Id: 38654
Other names: A. sinensis, Chinese alligator, MNHN 6494

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APEX1	CREBBP	A0A1U7SL62	A0A1U8DJG6	DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends.	CREB-binding protein.	0.454
APEX1	EP300	A0A1U7SL62	A0A1U8D7N2	DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends.	Histone acetyltransferase p300 isoform X1.	0.669
APEX1	POLE3	A0A1U7SL62	A0A1U8DB90	DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends.	DNA polymerase epsilon subunit 3.	0.657
ATRX	CREBBP	A0A1U7S0W7	A0A1U8DJG6	Transcriptional regulator ATRX isoform X1.	CREB-binding protein.	0.445
ATRX	LOC102373889	A0A1U7S0W7	A0A3Q0GM65	Transcriptional regulator ATRX isoform X1.	Core histone macro-H2A.2 isoform X1.	0.416
ATRX	LOC102378831	A0A1U7S0W7	A0A1U7RFV9	Transcriptional regulator ATRX isoform X1.	Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.	0.479
ATRX	RUVBL2	A0A1U7S0W7	A0A3Q0FX74	Transcriptional regulator ATRX isoform X1.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.439
CREBBP	APEX1	A0A1U8DJG6	A0A1U7SL62	CREB-binding protein.	DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends.	0.454
CREBBP	ATRX	A0A1U8DJG6	A0A1U7S0W7	CREB-binding protein.	Transcriptional regulator ATRX isoform X1.	0.445
CREBBP	DHX9	A0A1U8DJG6	A0A1U8DG56	CREB-binding protein.	ATP-dependent RNA helicase A isoform X1.	0.503
CREBBP	EP300	A0A1U8DJG6	A0A1U8D7N2	CREB-binding protein.	Histone acetyltransferase p300 isoform X1.	0.998
CREBBP	GATA1	A0A1U8DJG6	A0A3Q0HBT6	CREB-binding protein.	LOW QUALITY PROTEIN: erythroid transcription factor.	0.647
CREBBP	HMGN2	A0A1U8DJG6	A0A3Q0G7K2	CREB-binding protein.	Non-histone chromosomal protein HMG-17.	0.426
CREBBP	MYOD1	A0A1U8DJG6	A0A1U7RS25	CREB-binding protein.	Myogenic factor.	0.633
CREBBP	NR1H2	A0A1U8DJG6	A0A1U7RL56	CREB-binding protein.	Oxysterols receptor LXR-beta isoform X1.	0.467
CREBBP	NR1H3	A0A1U8DJG6	A0A3Q0HPM1	CREB-binding protein.	LOW QUALITY PROTEIN: oxysterols receptor LXR-alpha.	0.467
CREBBP	PAX6	A0A1U8DJG6	A0A1U7RYY7	CREB-binding protein.	Paired box protein Pax-6 isoform X1.	0.611
CREBBP	PPARGC1A	A0A1U8DJG6	A0A3Q0GT99	CREB-binding protein.	Peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1.	0.724
CREBBP	STAT3	A0A1U8DJG6	A0A3Q0GY41	CREB-binding protein.	Signal transducer and activator of transcription.	0.857
DHX9	CREBBP	A0A1U8DG56	A0A1U8DJG6	ATP-dependent RNA helicase A isoform X1.	CREB-binding protein.	0.503