(8 nodes) Early phagosome network (Alligator sinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RAB31	Ras-related protein Rab-31. (195 aa)
	UNC93B1	Protein unc-93 homolog B1. (578 aa)
	APPL1	DCC-interacting protein 13-alpha isoform X1. (669 aa)
	SYK	Tyrosine-protein kinase SYK isoform X1. (658 aa)
	SYT11	Synaptotagmin-11 isoform X1. (373 aa)
	SYT7	Synaptotagmin-7. (679 aa)
	LOC102375729	Phospholipase A(2). (137 aa)
	APPL2	DCC-interacting protein 13-beta isoform X1. (659 aa)

Your Current Organism:

Alligator sinensis

NCBI taxonomy Id: 38654
Other names: A. sinensis, Chinese alligator, MNHN 6494

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APPL1	APPL2	A0A3Q0HAC2	A0A1U7S4N5	DCC-interacting protein 13-alpha isoform X1.	DCC-interacting protein 13-beta isoform X1.	0.992
APPL1	RAB31	A0A3Q0HAC2	A0A3Q0HIG2	DCC-interacting protein 13-alpha isoform X1.	Ras-related protein Rab-31.	0.860
APPL2	APPL1	A0A1U7S4N5	A0A3Q0HAC2	DCC-interacting protein 13-beta isoform X1.	DCC-interacting protein 13-alpha isoform X1.	0.992
APPL2	RAB31	A0A1U7S4N5	A0A3Q0HIG2	DCC-interacting protein 13-beta isoform X1.	Ras-related protein Rab-31.	0.860
RAB31	APPL1	A0A3Q0HIG2	A0A3Q0HAC2	Ras-related protein Rab-31.	DCC-interacting protein 13-alpha isoform X1.	0.860
RAB31	APPL2	A0A3Q0HIG2	A0A1U7S4N5	Ras-related protein Rab-31.	DCC-interacting protein 13-beta isoform X1.	0.860