30 items (Alligator sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VPS28	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (219 aa)
	CHMP6	Charged multivesicular body protein 6. (176 aa)
	RILP	LOW QUALITY PROTEIN: rab-interacting lysosomal protein. (257 aa)
	LEPROT	Leptin receptor gene-related protein isoform X1. (167 aa)
	LAPTM4A	Lysosomal-associated transmembrane protein 4A isoform X1. (236 aa)
	CHMP7	Charged multivesicular body protein 7. (378 aa)
	CHMP1B	Charged multivesicular body protein 1b. (197 aa)
	VCP	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family. (761 aa)
	CHMP4B	Charged multivesicular body protein 4b isoform X1. (243 aa)
	CHMP4C	Charged multivesicular body protein 4c. (184 aa)
	CHMP5	Charged multivesicular body protein 5. (197 aa)
	UBXN6	UBX domain-containing protein 6 isoform X1. (441 aa)
	CHMP4A	Charged multivesicular body protein 4a. (163 aa)
	PTPN23	Tyrosine-protein phosphatase non-receptor type 23. (1689 aa)
	SORT1	Sortilin. (753 aa)
	LYST	LOW QUALITY PROTEIN: lysosomal-trafficking regulator. (3817 aa)
	STAM	Signal transducing adapter molecule 1. (542 aa)
	CHMP1A	Charged multivesicular body protein 1a. (196 aa)
	CHMP2A	Charged multivesicular body protein 2a. (220 aa)
	TMEM50B	Transmembrane protein 50B. (158 aa)
	SNF8	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family. (258 aa)
	LEPROTL1	Leptin receptor overlapping transcript-like 1. (131 aa)
	VTA1	Vacuolar protein sorting-associated protein VTA1 homolog. (305 aa)
	LAPTM4B	Lysosomal-associated transmembrane protein 4B. (243 aa)
	MVB12A	Multivesicular body subunit 12A. (240 aa)
	VPS36	Vacuolar protein-sorting-associated protein 36. (383 aa)
	FAM45A	Protein FAM45A isoform X1. (354 aa)
	CHMP2B	Charged multivesicular body protein 2b. (316 aa)
	VPS25	Vacuolar protein-sorting-associated protein 25. (267 aa)
	TMEM50A	Transmembrane protein 50A. (157 aa)

Your Current Organism:

Alligator sinensis

NCBI taxonomy Id: 38654
Other names: A. sinensis, Chinese alligator, MNHN 6494

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHMP1A	CHMP1B	A0A1U7SC45	A0A3Q0H1A6	Charged multivesicular body protein 1a.	Charged multivesicular body protein 1b.	0.902
CHMP1A	CHMP2A	A0A1U7SC45	A0A1U7SBC6	Charged multivesicular body protein 1a.	Charged multivesicular body protein 2a.	0.992
CHMP1A	CHMP2B	A0A1U7SC45	A0A1U7RFA5	Charged multivesicular body protein 1a.	Charged multivesicular body protein 2b.	0.959
CHMP1A	CHMP4A	A0A1U7SC45	A0A3Q0FLS9	Charged multivesicular body protein 1a.	Charged multivesicular body protein 4a.	0.645
CHMP1A	CHMP4B	A0A1U7SC45	A0A3Q0GJ35	Charged multivesicular body protein 1a.	Charged multivesicular body protein 4b isoform X1.	0.777
CHMP1A	CHMP4C	A0A1U7SC45	A0A3Q0GD46	Charged multivesicular body protein 1a.	Charged multivesicular body protein 4c.	0.777
CHMP1A	CHMP5	A0A1U7SC45	A0A3Q0G335	Charged multivesicular body protein 1a.	Charged multivesicular body protein 5.	0.909
CHMP1A	CHMP6	A0A1U7SC45	A0A3Q0HL13	Charged multivesicular body protein 1a.	Charged multivesicular body protein 6.	0.688
CHMP1A	CHMP7	A0A1U7SC45	A0A3Q0H275	Charged multivesicular body protein 1a.	Charged multivesicular body protein 7.	0.593
CHMP1A	MVB12A	A0A1U7SC45	A0A1U7RPA3	Charged multivesicular body protein 1a.	Multivesicular body subunit 12A.	0.505
CHMP1A	SNF8	A0A1U7SC45	A0A1U7S2P5	Charged multivesicular body protein 1a.	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	0.674
CHMP1A	VPS25	A0A1U7SC45	A0A1U7RC12	Charged multivesicular body protein 1a.	Vacuolar protein-sorting-associated protein 25.	0.716
CHMP1A	VPS28	A0A1U7SC45	A0A1U7SID2	Charged multivesicular body protein 1a.	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.727
CHMP1A	VPS36	A0A1U7SC45	A0A1U7RN58	Charged multivesicular body protein 1a.	Vacuolar protein-sorting-associated protein 36.	0.716
CHMP1A	VTA1	A0A1U7SC45	A0A1U7RUX6	Charged multivesicular body protein 1a.	Vacuolar protein sorting-associated protein VTA1 homolog.	0.991
CHMP1B	CHMP1A	A0A3Q0H1A6	A0A1U7SC45	Charged multivesicular body protein 1b.	Charged multivesicular body protein 1a.	0.902
CHMP1B	CHMP2A	A0A3Q0H1A6	A0A1U7SBC6	Charged multivesicular body protein 1b.	Charged multivesicular body protein 2a.	0.992
CHMP1B	CHMP2B	A0A3Q0H1A6	A0A1U7RFA5	Charged multivesicular body protein 1b.	Charged multivesicular body protein 2b.	0.959
CHMP1B	CHMP4A	A0A3Q0H1A6	A0A3Q0FLS9	Charged multivesicular body protein 1b.	Charged multivesicular body protein 4a.	0.645
CHMP1B	CHMP4B	A0A3Q0H1A6	A0A3Q0GJ35	Charged multivesicular body protein 1b.	Charged multivesicular body protein 4b isoform X1.	0.777