STRINGSTRING
LRSAM1 LRSAM1 MVB12B MVB12B MVB12A MVB12A VTA1 VTA1 VPS4A VPS4A VPS4B VPS4B PDCD6IP PDCD6IP CHMP5 CHMP5 CHMP6 CHMP6
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LRSAM1E3 ubiquitin-protein ligase LRSAM1. (723 aa)
MVB12BMultivesicular body subunit 12B. (385 aa)
MVB12AMultivesicular body subunit 12A. (240 aa)
VTA1Vacuolar protein sorting-associated protein VTA1 homolog. (305 aa)
VPS4AVacuolar protein sorting-associated protein 4A; Belongs to the AAA ATPase family. (342 aa)
VPS4BVacuolar protein sorting-associated protein 4B; Belongs to the AAA ATPase family. (441 aa)
PDCD6IPLOW QUALITY PROTEIN: programmed cell death 6-interacting protein. (848 aa)
CHMP5Charged multivesicular body protein 5. (197 aa)
CHMP6Charged multivesicular body protein 6. (176 aa)
Your Current Organism:
Alligator sinensis
NCBI taxonomy Id: 38654
Other names: A. sinensis, Chinese alligator, MNHN 6494
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