13 items (Alligator sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ABHD6	Monoacylglycerol lipase ABHD6. (337 aa)
	ABHD16A	Protein ABHD16A isoform X1. (552 aa)
	ABHD2	Monoacylglycerol lipase ABHD2. (425 aa)
	ABHD12B	Protein ABHD12B isoform X1. (395 aa)
	ABHD1	Protein ABHD1. (409 aa)
	ABHD12	Monoacylglycerol lipase ABHD12. (426 aa)
	LOC102374794	LOW QUALITY PROTEIN: protein ABHD1-like. (364 aa)
	ABHD16B	Protein ABHD16B. (449 aa)
	ABHD3	Phospholipase ABHD3. (406 aa)
	MGLL	Monoglyceride lipase isoform X1. (309 aa)
	LIPE	LOW QUALITY PROTEIN: hormone-sensitive lipase. (702 aa)
	TM7SF3	Transmembrane 7 superfamily member 3 isoform X1. (571 aa)
	ABHD15	LOW QUALITY PROTEIN: protein ABHD15. (410 aa)

Your Current Organism:

Alligator sinensis

NCBI taxonomy Id: 38654
Other names: A. sinensis, Chinese alligator, MNHN 6494

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABHD12	ABHD6	A0A3Q0H017	A0A1U7SNJ6	Monoacylglycerol lipase ABHD12.	Monoacylglycerol lipase ABHD6.	0.500
ABHD12B	ABHD6	A0A1U7S277	A0A1U7SNJ6	Protein ABHD12B isoform X1.	Monoacylglycerol lipase ABHD6.	0.500
ABHD16B	ABHD2	A0A1U7RZF3	A0A1U7S316	Protein ABHD16B.	Monoacylglycerol lipase ABHD2.	0.696
ABHD2	ABHD16B	A0A1U7S316	A0A1U7RZF3	Monoacylglycerol lipase ABHD2.	Protein ABHD16B.	0.696
ABHD6	ABHD12	A0A1U7SNJ6	A0A3Q0H017	Monoacylglycerol lipase ABHD6.	Monoacylglycerol lipase ABHD12.	0.500
ABHD6	ABHD12B	A0A1U7SNJ6	A0A1U7S277	Monoacylglycerol lipase ABHD6.	Protein ABHD12B isoform X1.	0.500
ABHD6	MGLL	A0A1U7SNJ6	A0A1U7RRT9	Monoacylglycerol lipase ABHD6.	Monoglyceride lipase isoform X1.	0.595
LIPE	MGLL	A0A3Q0FRV6	A0A1U7RRT9	LOW QUALITY PROTEIN: hormone-sensitive lipase.	Monoglyceride lipase isoform X1.	0.561
MGLL	ABHD6	A0A1U7RRT9	A0A1U7SNJ6	Monoglyceride lipase isoform X1.	Monoacylglycerol lipase ABHD6.	0.595
MGLL	LIPE	A0A1U7RRT9	A0A3Q0FRV6	Monoglyceride lipase isoform X1.	LOW QUALITY PROTEIN: hormone-sensitive lipase.	0.561