STRINGSTRING
PIK3R4 PIK3R4 VPS33A VPS33A MFSD8 MFSD8 VMP1 VMP1 LOC102388014 LOC102388014 UVRAG UVRAG SNAP29 SNAP29 LIX1 LIX1 TECPR1 TECPR1 MAP1LC3C MAP1LC3C RUBCNL RUBCNL MAP1LC3B MAP1LC3B SNAPIN SNAPIN VAMP8 VAMP8 ATG14 ATG14 SNX14 SNX14 STX17 STX17 LOC102377513 LOC102377513 VPS16 VPS16 LIX1L LIX1L MAP1LC3A MAP1LC3A CHMP5 CHMP5 PIK3C3 PIK3C3 VCP VCP LAMP2 LAMP2 EPG5 EPG5 CHMP6 CHMP6
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PIK3R4Phosphoinositide 3-kinase regulatory subunit 4 isoform X1. (1382 aa)
VPS33AVacuolar protein sorting-associated protein 33A; Belongs to the STXBP/unc-18/SEC1 family. (604 aa)
MFSD8Major facilitator superfamily domain-containing protein 8. (473 aa)
VMP1Vacuole membrane protein 1 isoform X1. (406 aa)
LOC102388014Microtubule-associated proteins 1A/1B light chain 3C-like. (131 aa)
UVRAGUV radiation resistance-associated gene protein. (672 aa)
SNAP29Synaptosomal-associated protein 29. (264 aa)
LIX1Protein limb expression 1 homolog. (288 aa)
TECPR1Tectonin beta-propeller repeat-containing protein 1 isoform X1. (1210 aa)
MAP1LC3CMicrotubule-associated proteins 1A/1B light chain 3C. (143 aa)
RUBCNLProtein RUBCNL-like isoform X1. (822 aa)
MAP1LC3BMicrotubule-associated proteins 1A/1B light chain 3B isoform X1. (157 aa)
SNAPINSNARE-associated protein Snapin. (78 aa)
VAMP8Vesicle-associated membrane protein 8. (115 aa)
ATG14Beclin 1-associated autophagy-related key regulator. (459 aa)
SNX14Sorting nexin-14 isoform X1. (896 aa)
STX17Syntaxin-17; Belongs to the syntaxin family. (305 aa)
LOC102377513Microtubule-associated proteins 1A/1B light chain 3C-like. (131 aa)
VPS16Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family. (813 aa)
LIX1LLIX1-like protein. (258 aa)
MAP1LC3AMicrotubule-associated proteins 1A/1B light chain 3A. (125 aa)
CHMP5Charged multivesicular body protein 5. (197 aa)
PIK3C3Phosphatidylinositol 3-kinase catalytic subunit type 3. (895 aa)
VCPTransitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family. (761 aa)
LAMP2Lysosome-associated membrane glycoprotein 2. (380 aa)
EPG5Ectopic P granules protein 5 homolog isoform X1. (2585 aa)
CHMP6Charged multivesicular body protein 6. (176 aa)
Your Current Organism:
Alligator sinensis
NCBI taxonomy Id: 38654
Other names: A. sinensis, Chinese alligator, MNHN 6494
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