18 items (Alligator sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	STARD4	stAR-related lipid transfer protein 4 isoform X1. (207 aa)
	STAR	Steroidogenic acute regulatory protein, mitochondrial; Plays a key role in steroid hormone synthesis by enhancing the metabolism of cholesterol into pregnenolone. Mediates the transfer of cholesterol from the outer mitochondrial membrane to the inner mitochondrial membrane where it is cleaved to pregnenolone. (287 aa)
	PODN	Podocan. (600 aa)
	GRAMD1C	GRAM domain-containing protein 1C isoform X2. (684 aa)
	CETP	LOW QUALITY PROTEIN: cholesteryl ester transfer protein. (223 aa)
	SCP2	Non-specific lipid-transfer protein isoform X1; Belongs to the thiolase-like superfamily. Thiolase family. (507 aa)
	STARD3	stAR-related lipid transfer protein 3. (444 aa)
	GRAMD1B	GRAM domain-containing protein 1B isoform X1. (885 aa)
	LOC102382111	Microsomal triglyceride transfer protein-like isoform X1. (888 aa)
	ABCG8	ATP-binding cassette sub-family G member 8. (677 aa)
	MTTP	Microsomal triglyceride transfer protein large subunit. (893 aa)
	ABCG5	ATP-binding cassette sub-family G member 5. (638 aa)
	OSBPL2	Oxysterol-binding protein; Belongs to the OSBP family. (481 aa)
	APOB	Apolipoprotein B-100. (3654 aa)
	GRAMD1A	GRAM domain-containing protein 1A. (687 aa)
	PLTP	Phospholipid transfer protein. (489 aa)
	STARD5	stAR-related lipid transfer protein 5. (182 aa)
	LOC102384651	Apolipoprotein B-100-like. (991 aa)

Your Current Organism:

Alligator sinensis

NCBI taxonomy Id: 38654
Other names: A. sinensis, Chinese alligator, MNHN 6494

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCG5	ABCG8	A0A1U7S1S3	A0A1U8DCY8	ATP-binding cassette sub-family G member 5.	ATP-binding cassette sub-family G member 8.	0.999
ABCG5	MTTP	A0A1U7S1S3	A0A1U7S102	ATP-binding cassette sub-family G member 5.	Microsomal triglyceride transfer protein large subunit.	0.416
ABCG8	ABCG5	A0A1U8DCY8	A0A1U7S1S3	ATP-binding cassette sub-family G member 8.	ATP-binding cassette sub-family G member 5.	0.999
ABCG8	APOB	A0A1U8DCY8	A0A1U7SB35	ATP-binding cassette sub-family G member 8.	Apolipoprotein B-100.	0.603
APOB	ABCG8	A0A1U7SB35	A0A1U8DCY8	Apolipoprotein B-100.	ATP-binding cassette sub-family G member 8.	0.603
APOB	CETP	A0A1U7SB35	A0A3Q0HDA9	Apolipoprotein B-100.	LOW QUALITY PROTEIN: cholesteryl ester transfer protein.	0.756
APOB	LOC102382111	A0A1U7SB35	A0A1U8DY45	Apolipoprotein B-100.	Microsomal triglyceride transfer protein-like isoform X1.	0.837
APOB	LOC102384651	A0A1U7SB35	A0A1U7SVD5	Apolipoprotein B-100.	Apolipoprotein B-100-like.	0.907
APOB	MTTP	A0A1U7SB35	A0A1U7S102	Apolipoprotein B-100.	Microsomal triglyceride transfer protein large subunit.	0.896
APOB	PLTP	A0A1U7SB35	A0A1U7SQ12	Apolipoprotein B-100.	Phospholipid transfer protein.	0.481
CETP	APOB	A0A3Q0HDA9	A0A1U7SB35	LOW QUALITY PROTEIN: cholesteryl ester transfer protein.	Apolipoprotein B-100.	0.756
CETP	LOC102384651	A0A3Q0HDA9	A0A1U7SVD5	LOW QUALITY PROTEIN: cholesteryl ester transfer protein.	Apolipoprotein B-100-like.	0.756
LOC102382111	APOB	A0A1U8DY45	A0A1U7SB35	Microsomal triglyceride transfer protein-like isoform X1.	Apolipoprotein B-100.	0.837
LOC102382111	LOC102384651	A0A1U8DY45	A0A1U7SVD5	Microsomal triglyceride transfer protein-like isoform X1.	Apolipoprotein B-100-like.	0.837
LOC102384651	APOB	A0A1U7SVD5	A0A1U7SB35	Apolipoprotein B-100-like.	Apolipoprotein B-100.	0.907
LOC102384651	CETP	A0A1U7SVD5	A0A3Q0HDA9	Apolipoprotein B-100-like.	LOW QUALITY PROTEIN: cholesteryl ester transfer protein.	0.756
LOC102384651	LOC102382111	A0A1U7SVD5	A0A1U8DY45	Apolipoprotein B-100-like.	Microsomal triglyceride transfer protein-like isoform X1.	0.837
LOC102384651	MTTP	A0A1U7SVD5	A0A1U7S102	Apolipoprotein B-100-like.	Microsomal triglyceride transfer protein large subunit.	0.896
LOC102384651	PLTP	A0A1U7SVD5	A0A1U7SQ12	Apolipoprotein B-100-like.	Phospholipid transfer protein.	0.481
MTTP	ABCG5	A0A1U7S102	A0A1U7S1S3	Microsomal triglyceride transfer protein large subunit.	ATP-binding cassette sub-family G member 5.	0.416