19 items (Alligator sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GRIA1	Glutamate receptor 1 isoform X2. (902 aa)
	GRIN2B	Glutamate receptor ionotropic, NMDA 2B. (1501 aa)
	GRIK1	Glutamate receptor ionotropic, kainate 1. (905 aa)
	GRID2	Glutamate receptor ionotropic, delta-2. (1007 aa)
	GRIN2C	LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 2C. (1397 aa)
	GRIN2D	Glutamate receptor ionotropic, NMDA 2D. (1534 aa)
	GRIN3B	Glutamate receptor ionotropic, NMDA 3B; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (874 aa)
	GRIK5	Glutamate receptor ionotropic, kainate 5. (865 aa)
	LOC102370596	Probable glutamate receptor; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (511 aa)
	GRID1	Glutamate receptor ionotropic, delta-1. (928 aa)
	GRIA3	Glutamate receptor 3. (886 aa)
	LOC102371662	Glutamate receptor ionotropic, kainate 2. (908 aa)
	GRIK4	Glutamate receptor ionotropic, kainate 4 isoform X1. (959 aa)
	GRIA2	Glutamate receptor 2 isoform X1. (942 aa)
	GRIA4	Glutamate receptor 4 isoform X1. (902 aa)
	GRIN2A	Glutamate receptor ionotropic, NMDA 2A. (1424 aa)
	GRIN3A	Glutamate receptor ionotropic, NMDA 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (885 aa)
	GRIK3	Glutamate receptor ionotropic, kainate 3. (879 aa)
	GRIN1	Glutamate receptor ionotropic, NMDA 1. (940 aa)

Your Current Organism:

Alligator sinensis

NCBI taxonomy Id: 38654
Other names: A. sinensis, Chinese alligator, MNHN 6494

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GRIA1	GRIA2	A0A1U7RCC6	A0A1U7RNI1	Glutamate receptor 1 isoform X2.	Glutamate receptor 2 isoform X1.	0.987
GRIA1	GRIA3	A0A1U7RCC6	A0A1U7SDG5	Glutamate receptor 1 isoform X2.	Glutamate receptor 3.	0.964
GRIA1	GRIA4	A0A1U7RCC6	A0A1U7RFD4	Glutamate receptor 1 isoform X2.	Glutamate receptor 4 isoform X1.	0.891
GRIA1	GRIN1	A0A1U7RCC6	A0A3Q0H3G4	Glutamate receptor 1 isoform X2.	Glutamate receptor ionotropic, NMDA 1.	0.597
GRIA1	GRIN2A	A0A1U7RCC6	A0A1U7R8T7	Glutamate receptor 1 isoform X2.	Glutamate receptor ionotropic, NMDA 2A.	0.510
GRIA1	GRIN2B	A0A1U7RCC6	A0A3Q0GMD1	Glutamate receptor 1 isoform X2.	Glutamate receptor ionotropic, NMDA 2B.	0.501
GRIA2	GRIA1	A0A1U7RNI1	A0A1U7RCC6	Glutamate receptor 2 isoform X1.	Glutamate receptor 1 isoform X2.	0.987
GRIA2	GRIA3	A0A1U7RNI1	A0A1U7SDG5	Glutamate receptor 2 isoform X1.	Glutamate receptor 3.	0.997
GRIA2	GRIA4	A0A1U7RNI1	A0A1U7RFD4	Glutamate receptor 2 isoform X1.	Glutamate receptor 4 isoform X1.	0.975
GRIA2	GRIN1	A0A1U7RNI1	A0A3Q0H3G4	Glutamate receptor 2 isoform X1.	Glutamate receptor ionotropic, NMDA 1.	0.520
GRIA2	GRIN2A	A0A1U7RNI1	A0A1U7R8T7	Glutamate receptor 2 isoform X1.	Glutamate receptor ionotropic, NMDA 2A.	0.472
GRIA2	GRIN2B	A0A1U7RNI1	A0A3Q0GMD1	Glutamate receptor 2 isoform X1.	Glutamate receptor ionotropic, NMDA 2B.	0.414
GRIA3	GRIA1	A0A1U7SDG5	A0A1U7RCC6	Glutamate receptor 3.	Glutamate receptor 1 isoform X2.	0.964
GRIA3	GRIA2	A0A1U7SDG5	A0A1U7RNI1	Glutamate receptor 3.	Glutamate receptor 2 isoform X1.	0.997
GRIA3	GRIA4	A0A1U7SDG5	A0A1U7RFD4	Glutamate receptor 3.	Glutamate receptor 4 isoform X1.	0.790
GRIA3	GRIN1	A0A1U7SDG5	A0A3Q0H3G4	Glutamate receptor 3.	Glutamate receptor ionotropic, NMDA 1.	0.501
GRIA4	GRIA1	A0A1U7RFD4	A0A1U7RCC6	Glutamate receptor 4 isoform X1.	Glutamate receptor 1 isoform X2.	0.891
GRIA4	GRIA2	A0A1U7RFD4	A0A1U7RNI1	Glutamate receptor 4 isoform X1.	Glutamate receptor 2 isoform X1.	0.975
GRIA4	GRIA3	A0A1U7RFD4	A0A1U7SDG5	Glutamate receptor 4 isoform X1.	Glutamate receptor 3.	0.790
GRIA4	GRIN1	A0A1U7RFD4	A0A3Q0H3G4	Glutamate receptor 4 isoform X1.	Glutamate receptor ionotropic, NMDA 1.	0.501