(8 nodes) Proteasome alpha-type subunit network (Alligator sinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PSMA6	Proteasome endopeptidase complex; Belongs to the peptidase T1A family. (382 aa)
	PSMA4	Proteasome subunit alpha type. (261 aa)
	PSMA7	Proteasome subunit alpha type. (248 aa)
	PSMA3	Proteasome subunit alpha type. (260 aa)
	PSMA1	Proteasome endopeptidase complex. (265 aa)
	PSMA5	Proteasome endopeptidase complex. (183 aa)
	PSMA8	Proteasome subunit alpha type. (249 aa)
	PSMA2	Proteasome subunit alpha type. (234 aa)

Your Current Organism:

Alligator sinensis

NCBI taxonomy Id: 38654
Other names: A. sinensis, Chinese alligator, MNHN 6494

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PSMA1	PSMA2	A0A3Q0G089	A0A1U7RI51	Proteasome endopeptidase complex.	Proteasome subunit alpha type.	0.999
PSMA1	PSMA3	A0A3Q0G089	A0A1U8D5M4	Proteasome endopeptidase complex.	Proteasome subunit alpha type.	0.999
PSMA1	PSMA4	A0A3Q0G089	A0A1U7RQ17	Proteasome endopeptidase complex.	Proteasome subunit alpha type.	0.999
PSMA1	PSMA5	A0A3Q0G089	A0A3Q0HNG2	Proteasome endopeptidase complex.	Proteasome endopeptidase complex.	0.999
PSMA1	PSMA6	A0A3Q0G089	A0A1U7RM45	Proteasome endopeptidase complex.	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	0.999
PSMA1	PSMA7	A0A3Q0G089	A0A1U7RU46	Proteasome endopeptidase complex.	Proteasome subunit alpha type.	0.989
PSMA1	PSMA8	A0A3Q0G089	A0A1U7R2Z5	Proteasome endopeptidase complex.	Proteasome subunit alpha type.	0.989
PSMA2	PSMA1	A0A1U7RI51	A0A3Q0G089	Proteasome subunit alpha type.	Proteasome endopeptidase complex.	0.999
PSMA2	PSMA3	A0A1U7RI51	A0A1U8D5M4	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
PSMA2	PSMA4	A0A1U7RI51	A0A1U7RQ17	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
PSMA2	PSMA5	A0A1U7RI51	A0A3Q0HNG2	Proteasome subunit alpha type.	Proteasome endopeptidase complex.	0.999
PSMA2	PSMA6	A0A1U7RI51	A0A1U7RM45	Proteasome subunit alpha type.	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	0.999
PSMA2	PSMA7	A0A1U7RI51	A0A1U7RU46	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.989
PSMA2	PSMA8	A0A1U7RI51	A0A1U7R2Z5	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.989
PSMA3	PSMA1	A0A1U8D5M4	A0A3Q0G089	Proteasome subunit alpha type.	Proteasome endopeptidase complex.	0.999
PSMA3	PSMA2	A0A1U8D5M4	A0A1U7RI51	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
PSMA3	PSMA4	A0A1U8D5M4	A0A1U7RQ17	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
PSMA3	PSMA5	A0A1U8D5M4	A0A3Q0HNG2	Proteasome subunit alpha type.	Proteasome endopeptidase complex.	0.999
PSMA3	PSMA6	A0A1U8D5M4	A0A1U7RM45	Proteasome subunit alpha type.	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	0.999
PSMA3	PSMA7	A0A1U8D5M4	A0A1U7RU46	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.989