17 items (Alligator sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PPP2R5C	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (524 aa)
	PPP2R5A	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (481 aa)
	PLA2G4A	Phospholipase A2. (749 aa)
	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform. (589 aa)
	APOB	Apolipoprotein B-100. (3654 aa)
	PPP2R5B	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (493 aa)
	LOC102384651	Apolipoprotein B-100-like. (991 aa)
	LOC102383324	Uncharacterized protein LOC102383324. (3867 aa)
	PPP2CB	Serine/threonine-protein phosphatase. (244 aa)
	PTPN6	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (613 aa)
	MILR1	Allergin-1 isoform X1. (374 aa)
	PPP2CA	Serine/threonine-protein phosphatase. (244 aa)
	PECAM1	Platelet endothelial cell adhesion molecule isoform X1. (849 aa)
	PPP2R5E	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (515 aa)
	LOC102386995	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (603 aa)
	PTPN11	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (609 aa)
	PPP2R5D	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (451 aa)

Your Current Organism:

Alligator sinensis

NCBI taxonomy Id: 38654
Other names: A. sinensis, Chinese alligator, MNHN 6494

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APOB	LOC102384651	A0A1U7SB35	A0A1U7SVD5	Apolipoprotein B-100.	Apolipoprotein B-100-like.	0.907
APOB	LOC102386995	A0A1U7SB35	A0A3Q0G3B0	Apolipoprotein B-100.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.401
APOB	PPP2R5B	A0A1U7SB35	A0A1U7SCJ2	Apolipoprotein B-100.	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit.	0.443
APOB	PTPN11	A0A1U7SB35	A0A3Q0G8L8	Apolipoprotein B-100.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.401
APOB	PTPN6	A0A1U7SB35	A0A1U8DW86	Apolipoprotein B-100.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.479
LOC102384651	APOB	A0A1U7SVD5	A0A1U7SB35	Apolipoprotein B-100-like.	Apolipoprotein B-100.	0.907
LOC102384651	LOC102386995	A0A1U7SVD5	A0A3Q0G3B0	Apolipoprotein B-100-like.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.401
LOC102384651	PPP2R5B	A0A1U7SVD5	A0A1U7SCJ2	Apolipoprotein B-100-like.	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit.	0.443
LOC102384651	PTPN11	A0A1U7SVD5	A0A3Q0G8L8	Apolipoprotein B-100-like.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.401
LOC102384651	PTPN6	A0A1U7SVD5	A0A1U8DW86	Apolipoprotein B-100-like.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.479
LOC102386995	APOB	A0A3Q0G3B0	A0A1U7SB35	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Apolipoprotein B-100.	0.401
LOC102386995	LOC102384651	A0A3Q0G3B0	A0A1U7SVD5	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Apolipoprotein B-100-like.	0.401
LOC102386995	MILR1	A0A3Q0G3B0	A0A3Q0FWW3	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Allergin-1 isoform X1.	0.829
LOC102386995	PECAM1	A0A3Q0G3B0	A0A3Q0G1W6	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Platelet endothelial cell adhesion molecule isoform X1.	0.829
LOC102386995	PTPN11	A0A3Q0G3B0	A0A3Q0G8L8	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.901
LOC102386995	PTPN6	A0A3Q0G3B0	A0A1U8DW86	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.508
MILR1	LOC102386995	A0A3Q0FWW3	A0A3Q0G3B0	Allergin-1 isoform X1.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.829
MILR1	PPP2R1A	A0A3Q0FWW3	A0A1U7S4G2	Allergin-1 isoform X1.	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform.	0.414
MILR1	PTPN11	A0A3Q0FWW3	A0A3Q0G8L8	Allergin-1 isoform X1.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.829
MILR1	PTPN6	A0A3Q0FWW3	A0A1U8DW86	Allergin-1 isoform X1.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.788