34 items (Alligator sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LRP1B	Low-density lipoprotein receptor-related protein 1B. (4577 aa)
	PLB1	Phospholipase B1, membrane-associated. (1353 aa)
	LOC102384482	Glypican-5-like; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (585 aa)
	RBP4	Retinol-binding protein 4; Belongs to the calycin superfamily. Lipocalin family. (179 aa)
	GPC1	Glypican-1 isoform X1; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (529 aa)
	BCO1	Beta,beta-carotene 15,15'-dioxygenase. (513 aa)
	HSPG2	LOW QUALITY PROTEIN: basement membrane-specific heparan sulfate proteoglycan core protein. (4462 aa)
	SDC3	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (427 aa)
	AGRN	Agrin. (1958 aa)
	LOC102387409	Apolipoprotein A-II-like. (103 aa)
	LRP10	Low-density lipoprotein receptor-related protein 10. (579 aa)
	LRP1	LOW QUALITY PROTEIN: prolow-density lipoprotein receptor-related protein 1. (4714 aa)
	APOM	Apolipoprotein M. (184 aa)
	GPC3	Glypican-3 isoform X1; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (596 aa)
	BCO2	Beta,beta-carotene 9',10'-oxygenase isoform X1. (564 aa)
	LOC102383324	Uncharacterized protein LOC102383324. (3867 aa)
	APOA4	Apolipoprotein A-IV isoform X1. (396 aa)
	GPC6	Glypican-6; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (525 aa)
	APOE	Apolipoprotein E isoform X1. (252 aa)
	LOC102384651	Apolipoprotein B-100-like. (991 aa)
	APOA1	Apolipoprotein A-I. (259 aa)
	SDC1	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (311 aa)
	LOC102377010	Retinol-binding protein 1; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family. (93 aa)
	LRP12	Low-density lipoprotein receptor-related protein 12. (831 aa)
	RBP2	Retinol-binding protein 2; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family. (135 aa)
	APOB	Apolipoprotein B-100. (3654 aa)
	GPC4	Glypican-4 isoform X1; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (601 aa)
	LRAT	Lecithin retinol acyltransferase. (175 aa)
	SDC2	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (209 aa)
	RETSAT	All-trans-retinol 13,14-reductase isoform X1. (607 aa)
	CLPS	Colipase. (112 aa)
	GPC5	Glypican-5; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (423 aa)
	TTR	Transthyretin; Thyroid hormone-binding protein. Probably transports thyroxine from the bloodstream to the brain. (150 aa)
	LRP3	Low-density lipoprotein receptor-related protein 3. (829 aa)

Your Current Organism:

Alligator sinensis

NCBI taxonomy Id: 38654
Other names: A. sinensis, Chinese alligator, MNHN 6494

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGRN	APOB	A0A3Q0G2Q1	A0A1U7SB35	Agrin.	Apolipoprotein B-100.	0.408
AGRN	APOE	A0A3Q0G2Q1	A0A1U7SXQ0	Agrin.	Apolipoprotein E isoform X1.	0.514
AGRN	HSPG2	A0A3Q0G2Q1	A0A3Q0GIL5	Agrin.	LOW QUALITY PROTEIN: basement membrane-specific heparan sulfate proteoglycan core protein.	0.716
AGRN	LOC102384651	A0A3Q0G2Q1	A0A1U7SVD5	Agrin.	Apolipoprotein B-100-like.	0.408
AGRN	LRP1	A0A3Q0G2Q1	A0A1U8DV57	Agrin.	LOW QUALITY PROTEIN: prolow-density lipoprotein receptor-related protein 1.	0.655
AGRN	LRP10	A0A3Q0G2Q1	A0A3Q0FNU1	Agrin.	Low-density lipoprotein receptor-related protein 10.	0.426
AGRN	LRP12	A0A3Q0G2Q1	A0A1U7SBI0	Agrin.	Low-density lipoprotein receptor-related protein 12.	0.426
AGRN	LRP1B	A0A3Q0G2Q1	A0A1U7RZQ0	Agrin.	Low-density lipoprotein receptor-related protein 1B.	0.655
AGRN	LRP3	A0A3Q0G2Q1	A0A1U7RAX6	Agrin.	Low-density lipoprotein receptor-related protein 3.	0.426
AGRN	SDC1	A0A3Q0G2Q1	A0A1U7SF51	Agrin.	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	0.529
AGRN	SDC2	A0A3Q0G2Q1	A0A1U7RYG7	Agrin.	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	0.472
AGRN	SDC3	A0A3Q0G2Q1	A0A3Q0GE36	Agrin.	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	0.468
APOA1	APOA4	A0A1U7SH51	A0A1U8DBC9	Apolipoprotein A-I.	Apolipoprotein A-IV isoform X1.	0.640
APOA1	APOB	A0A1U7SH51	A0A1U7SB35	Apolipoprotein A-I.	Apolipoprotein B-100.	0.684
APOA1	APOE	A0A1U7SH51	A0A1U7SXQ0	Apolipoprotein A-I.	Apolipoprotein E isoform X1.	0.766
APOA1	LOC102383324	A0A1U7SH51	A0A1U8DBU7	Apolipoprotein A-I.	Uncharacterized protein LOC102383324.	0.684
APOA1	LOC102384651	A0A1U7SH51	A0A1U7SVD5	Apolipoprotein A-I.	Apolipoprotein B-100-like.	0.684
APOA1	LOC102387409	A0A1U7SH51	A0A3Q0FWD5	Apolipoprotein A-I.	Apolipoprotein A-II-like.	0.749
APOA4	APOA1	A0A1U8DBC9	A0A1U7SH51	Apolipoprotein A-IV isoform X1.	Apolipoprotein A-I.	0.640
APOA4	APOB	A0A1U8DBC9	A0A1U7SB35	Apolipoprotein A-IV isoform X1.	Apolipoprotein B-100.	0.581