(14 nodes) BAR domain of APPL family network (Alligator sinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARHGAP10	Rho GTPase-activating protein 10 isoform X1. (795 aa)
	OPHN1	Oligophrenin-1 isoform X1. (865 aa)
	ARHGAP26	Rho GTPase-activating protein 26 isoform X1. (760 aa)
	APPL2	DCC-interacting protein 13-beta isoform X1. (659 aa)
	ARHGAP42	Rho GTPase-activating protein 42 isoform X1. (874 aa)
	ACAP3	arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3. (887 aa)
	ASAP3	arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3. (1004 aa)
	ACAP1	arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1. (671 aa)
	ASAP2	arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 isoform X1. (978 aa)
	FAM92B	Protein FAM92B. (332 aa)
	ASAP1	arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 isoform X1. (1129 aa)
	ACAP2	arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 isoform X1. (778 aa)
	APPL1	DCC-interacting protein 13-alpha isoform X1. (669 aa)
	LOC102384135	arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1-like. (991 aa)

Your Current Organism:

Alligator sinensis

NCBI taxonomy Id: 38654
Other names: A. sinensis, Chinese alligator, MNHN 6494

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACAP1	APPL1	A0A3Q0FQF9	A0A3Q0HAC2	arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1.	DCC-interacting protein 13-alpha isoform X1.	0.546
ACAP1	APPL2	A0A3Q0FQF9	A0A1U7S4N5	arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1.	DCC-interacting protein 13-beta isoform X1.	0.546
ACAP2	APPL1	A0A3Q0H5B3	A0A3Q0HAC2	arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 isoform X1.	DCC-interacting protein 13-alpha isoform X1.	0.546
ACAP2	APPL2	A0A3Q0H5B3	A0A1U7S4N5	arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 isoform X1.	DCC-interacting protein 13-beta isoform X1.	0.546
ACAP3	APPL1	A0A1U8CVH3	A0A3Q0HAC2	arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3.	DCC-interacting protein 13-alpha isoform X1.	0.546
ACAP3	APPL2	A0A1U8CVH3	A0A1U7S4N5	arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3.	DCC-interacting protein 13-beta isoform X1.	0.546
APPL1	ACAP1	A0A3Q0HAC2	A0A3Q0FQF9	DCC-interacting protein 13-alpha isoform X1.	arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1.	0.546
APPL1	ACAP2	A0A3Q0HAC2	A0A3Q0H5B3	DCC-interacting protein 13-alpha isoform X1.	arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 isoform X1.	0.546
APPL1	ACAP3	A0A3Q0HAC2	A0A1U8CVH3	DCC-interacting protein 13-alpha isoform X1.	arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3.	0.546
APPL1	APPL2	A0A3Q0HAC2	A0A1U7S4N5	DCC-interacting protein 13-alpha isoform X1.	DCC-interacting protein 13-beta isoform X1.	0.992
APPL1	ASAP1	A0A3Q0HAC2	A0A3Q0GN56	DCC-interacting protein 13-alpha isoform X1.	arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 isoform X1.	0.554
APPL1	ASAP2	A0A3Q0HAC2	A0A3Q0G5I7	DCC-interacting protein 13-alpha isoform X1.	arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 isoform X1.	0.554
APPL1	ASAP3	A0A3Q0HAC2	A0A1U8DNJ5	DCC-interacting protein 13-alpha isoform X1.	arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3.	0.582
APPL1	LOC102384135	A0A3Q0HAC2	A0A3Q0HHR5	DCC-interacting protein 13-alpha isoform X1.	arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1-like.	0.554
APPL2	ACAP1	A0A1U7S4N5	A0A3Q0FQF9	DCC-interacting protein 13-beta isoform X1.	arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1.	0.546
APPL2	ACAP2	A0A1U7S4N5	A0A3Q0H5B3	DCC-interacting protein 13-beta isoform X1.	arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 isoform X1.	0.546
APPL2	ACAP3	A0A1U7S4N5	A0A1U8CVH3	DCC-interacting protein 13-beta isoform X1.	arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3.	0.546
APPL2	APPL1	A0A1U7S4N5	A0A3Q0HAC2	DCC-interacting protein 13-beta isoform X1.	DCC-interacting protein 13-alpha isoform X1.	0.992
APPL2	ASAP1	A0A1U7S4N5	A0A3Q0GN56	DCC-interacting protein 13-beta isoform X1.	arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 isoform X1.	0.554
APPL2	ASAP2	A0A1U7S4N5	A0A3Q0G5I7	DCC-interacting protein 13-beta isoform X1.	arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 isoform X1.	0.554